Rana temporaria (common frog): 120914005 Help Entry 120914005         CDS       T07929                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism rtem  Rana temporaria (common frog) Brite KEGG Orthology (KO) [BR:rtem00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:rtem03021]     120914005 (SETX) Enzymes [BR:rtem01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      120914005 (SETX)     5.6.2.5  RNA 5'-3' helicase      120914005 (SETX) Transcription machinery [BR:rtem03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      120914005 (SETX) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 UvrD-helicase AAA_30 AAA_22 AAA_16 Helicase_RecD RNA_helicase Motif Other DBs NCBI-GeneID:  120914005 NCBI-ProteinID:  XP_040180350 LinkDB All DBs Position 9:complement(124382564..124581699) Genome browser AA seq 2476 aa AA seqDB search MSTCRWCTPGGSVTADLLKSYAANGLQNEDFIGANDDLSYCMECVVEYHRARDVVPELHK SLWTLETSRLIAQLENAMREEIEDDDELYLVEEDGEKQLYGYSDCSFESNVRVPLLEILK FPYLLVDKRVGELTVEALCKMEQVNNTFQVFEKLPGVYLLLVHPNETIRRWAILTARAQG KVDRDDYYDLEDVFTCLFKVIELGLFENSDIYMFTELEEGKLILLPSHLYDTSNFKNYWL GICMLLTVLEEQAMASFLLGPNKQNDFMQSILHVMEKQTEDESSNPFWPALHCFMTILDR LGSKVWGQLIDPIQAFQTIIGSQSYNSEIENIRKNCWRTTKCELDPDDDDFVTCSQAVYS FNTEKVKKEAGWKSAICPDYCPNMYEDMQSLASILQSDIGQDIRVHNSTFLWFIPYVQSV MDLKDLGVAYIMEVIHHLYSEIKVVFTQASSQCDKVTEFFVRVLVAIVELHRSKKCLHFL WISSHKWVEAIVKCSLLPVKSPRVTSTSALPSSPISQTPSSVQFACMQLIRSLLREGFQL GQQAACKQYLDKFNLIIRGNLLRNLDLSKSEVQGLQTCLTQIIKSIKDKVCSIPSSSADQ SPASLIQAVPFIKTEKMDVECYGSSITSPHNLPDVPLHPLEHREQLKMNIKKESPDCSSY LKTHIKPENFDDASTSISAQKEPKRLAAGWQSKLSKVIAKAPSLKPTTANVVAESKISSS EGNSSTAQREYKTAKEQKDLLLKAKSCGNESESDDLNDGDENLSQKERVKKCVDRSQQTN TDRLPVSEQLQRLSLDNNPAFRPIKREFQEVAEVSSSSFVESNIDSDSVVDSEIDDALPL SVVKKKLLRKNSKKSALIKTKMNRDYTAEVAQMKDSSFSADSNQQGSDVPEYSLKRKVKG ATRAIRDDDISSKAKSDHIITISDDTDPEEEPVCRSISIQKQDTGQDASEKPIQRPDQVK SEPGNPSFEEYDSQCFEFETEDDIYSVWSDSQLEETKPNIQENKSSRPETNNIEDFDQNN DLNQWGYDTDYVSDDIIENAAKDAEQQFKLSTTTGNTPSSKDHGVNKAPHETVNSSVFYE KISHEFVAETDTKIKKPKLAKEPVSFHAKSRNTKSPATQRKLQTGKANKAESPLKGQGHV RRNGSPGKASPAVVPPKKMHKCPEPASTVEKLSLKKAPRKAFDLSQRSLDSLAELRNYGK SAGLVETRKRKSKLISPQSLLVKGNKYLACQDKQFYRQSRPKETEKKRLSSDAEIDDKNA GMATKQSGHKLGDQTSLPGQMNRTEKMERAKQQEPQRKEIMDAEKGYMGSSETKDTETND HPVAGLVPQSSLQENVNAQPTMPCTHDPKDDDDDDLFLTQADPIDMDLCSQLETDIHVGK PQDICSSSAVDHSTSVPQQMDVSKCSFKDCTEFVTVSGDKCPIHSAAEKKEDHMFARPGL PPSLQKVSRPSTAKVYSSGTTSRTASLTKDLESLPKHLPTAKAKPSVPRPTVQSPAQNKT PVYQSTSNVLKPLINQNNIPIQCSSNSVQGTRMNPAAIRTPQWDQTWLLQQVLNWTFDMF DNIGQFGPPNKLCQLPLLKVPLRFSDYAEYFSVFCPLMLLNTFESLAQEWALKQPSLTSY LCKLHLQNFYSENQMNRGEFQVLIRNVDLNMQWLPKEGDLVFLLVPEPPGTSPREESESQ GPITYNTGHVSRFTRTQYTQTLEKEQYTLCELSIHTHINLLPYCKQQVQCAVIGSLITTQ RQYKAMIQLQRNPLFKPIICPTPNDFLPRNKLENQGNLLPVSREYNSDQRNAIENAYAMV TQHPRLPRICMIYGPPGTGKSKTIVGLLYRILMESNITDQNFNAKNKRNRVLVCAPSNAA LDDLMKKIILEFKEKCRDKKNTLGNCGDINLVRLGFEKTISSDVVKFSLDCQVNYRINKA SQDLAVIKQKEALDKQLDELSHQRAMERCHKNTCEELDQKIARLTRERQYVANVLKEQRR RPQEFQRNVILESHVICCTLSTSGGILLESAFRQLGQEPFSCVIVDEAGQSCEVETLIPL LHRCCKLVLVGDPEQLPPTVISMKAEELGYGQSLMSRLCQILEASGSNPPIQRLTLQYRM HPDICLFPSKHFYNSILKTDRATEEIRCSSDWPFQPYMVFDVSDGYETKEKESFSNLSEI EMAVALIKLIKSKKKEFCFRNIGIITPYRAQKIRLIAELKKTFGDNSMPGEVDTVDGFQG RQKDCIIVTCVRANSIQGCIGFLASRQRLNVTITRAKFSLFILGSLRTLMENKDWNHLIQ DAQRRGALVKTKQEHYQRDVNRILKLKPVVQRTTSFPHTKPVVVHTPPVEAPCRGINTLS VPPPRRPIAHPAVAVRQHNSRSLSVPPMSEKKMPSHVGPPSIPLASSGKLRDPRLARRCE LTRSNSTPPSSLQQSSDKNVSQSRVYQNFPPTSVTGVKRPSQPAHRDPRSSQLRNEGRDH DYRGHKDQEYKKRKVS NT seq 7431 nt NT seq  +upstreamnt  +downstreamnt atgagcacctgtcgctggtgcacacctgggggctctgtcacagcagatctgctgaagagc tatgctgctaatggactacaaaatgaggattttattggcgccaacgatgacctctcctat tgcatggaatgtgtggtggaataccacagagccagagatgtcgttccagagcttcacaag tctctgtggaccttggaaacatcacggcttattgcacagttggagaatgcaatgcgggaa gagattgaggatgacgatgagctctatctagttgaagaagatggagagaaacaactctat ggctacagtgactgcagttttgagagcaatgtccgggtaccattattggagatcctcaag tttccatatttgcttgttgacaaacgtgttggtgaacttactgttgaggccttgtgcaag atggaacaagttaataacacattccaggtattcgaaaaacttcctggtgtatacctactt ctagtacatcccaatgagacgatccgccgctgggccattttgactgccagagcacagggg aaggtggatcgggatgattattatgatttggaggacgttttcacctgcctttttaaggtc attgagcttggcctgtttgaaaactctgacatttatatgtttactgagcttgaagaggga aagctgattctcctgccatcacatttgtacgacacgtctaatttcaagaactactggctg ggtatttgcatgttgctgacagtacttgaagaacaggccatggcatcattcttgctaggg cctaacaagcagaacgattttatgcagtctattcttcacgttatggaaaagcaaacagaa gatgaaagctcaaaccccttttggcctgctcttcactgcttcatgaccatcctcgatcgc ttgggttccaaagtatgggggcagctcattgatcccattcaggcatttcagactatcata gggagccaaagttacaacagcgagattgaaaacatcaggaaaaactgttggaggacgaca aagtgtgagctcgatccagatgatgatgactttgtgacatgtagccaagctgtgtacagt tttaatactgaaaaagttaaaaaggaagctggttggaaaagtgcaatttgcccagactat tgtcctaatatgtatgaagatatgcagagccttgctagcatactccaatcagacattggt caggatatacgtgtccacaatagcacctttctatggttcattccttatgttcaatctgtc atggaccttaaagacttgggagttgcttacattatggaagtgattcaccacctgtactct gaaataaaggtggtcttcactcaggcaagcagccagtgtgacaaagtgacagaattcttt gtcagagtcttggttgccatcgttgaactgcatcgaagtaaaaagtgccttcatttcctc tggattagctctcacaagtgggttgaagccattgtcaagtgttcccttcttccagtcaaa agcccaagagttacatccacctcggctttaccttcttcccccatttctcagactccttct tctgtgcaatttgcttgcatgcaattaataaggagccttttacgagaaggttttcagttg gggcagcaagcagcttgcaaacaatatttggacaaattcaacctgattatcagaggaaat ttactaagaaacttggatcttagcaagtctgaggttcaaggattgcaaacctgtctcact caaatcatcaaaagtattaaggacaaggtatgcagcattcctagttcttccgctgatcaa agtccagcaagcctgatccaggctgtaccctttattaagacagaaaaaatggatgtggaa tgttatggatccagcattacttctccacataacttacctgatgttcctctccacccctta gaacatagggaacaattaaaaatgaatataaaaaaagagtcgcctgactgtagttcatac ctaaagacccatattaaaccggaaaatttcgatgatgcaagtacttccatttctgcccaa aaggaaccaaaaagactggcagcaggatggcaatccaaattatctaaagtcattgcaaaa gctccaagcttgaagccaaccacagcaaatgtagtggctgaaagtaaaataagcagcagt gaagggaactccagcactgcacaaagagaatataaaacggctaaagagcagaaagatttg ttgctaaaagcaaaaagttgcggtaatgaaagtgagtcagatgatttaaatgacggtgat gaaaacctatctcagaaagagcgtgtcaaaaaatgtgtggacagaagtcaacagaccaat actgaccgtcttcctgtaagtgagcaacttcaaaggctgtctttagacaacaacccagca ttccgacccataaagagagaatttcaagaggttgcagaggtcagctcttccagctttgta gaaagcaatattgactctgactctgtagtcgacagtgaaatagatgatgctcttcccttg tctgtggttaagaaaaagcttctaaggaaaaattccaaaaagtcagctcttataaaaact aaaatgaatcgcgattacacagcagaggtggcacagatgaaagattccagtttttctgct gattcaaatcagcaggggtctgatgtaccagaatattctctaaagaggaaagttaaaggg gcaactagagctattagggatgatgatatttcctccaaagcaaaatctgatcatattata acaatctcagatgacactgacccagaagaagaaccagtttgcagatctatttcaatacaa aagcaggacactggtcaagatgcttcagaaaaaccaatacagagaccagatcaagtcaag tctgagcctggcaatccaagctttgaggagtatgattcacaatgttttgaatttgaaacc gaggatgatatatattctgtgtggagtgattcacagttggaggagacgaagcctaatatt caagaaaataaatcctcgaggccagagaccaacaatattgaggactttgaccaaaacaat gatctcaatcagtgggggtatgacaccgactatgtttctgatgatataatagagaatgca gctaaagatgcagaacagcaatttaaactatcaaccactactggaaacactccatctagt aaagatcatggtgttaataaagcaccacatgagactgtgaattccagcgtgttttatgaa aaaatatctcatgagtttgtcgcagaaacggacactaaaataaaaaagcccaaattggct aaagaaccagtttctttccatgccaaaagtaggaacacaaaatctccagcaacacaaagg aaactgcaaactggcaaagcaaacaaagctgaaagtcctttaaaaggccagggacatgtt aggaggaatggaagcccgggtaaagcttcccctgctgtggtgccaccaaagaaaatgcac aagtgtcctgaaccagcttccactgttgaaaaactaagcttaaaaaaggctccccgcaaa gcttttgatctgtctcaaagatcccttgatagcttggccgaattacggaattatggcaag tctgcgggacttgttgagactagaaagcgtaaatcaaaactgatttcaccacagtccctt ttagtaaaaggtaataagtatttggcttgccaggataaacagttttatcgacagtccagg cctaaggagacagagaaaaagagattgagtagtgatgctgaaatcgatgacaaaaatgca ggtatggcaacaaagcaaagtggacacaagctaggggatcagacttctcttccaggtcag atgaacagaacagagaaaatggagagggcaaaacagcaagaaccccaaagaaaggagatt atggatgcagaaaaagggtatatgggcagttctgaaacgaaagatactgaaacgaatgac catcctgttgctgggttagtgccacagtcaagtttgcaagagaatgtcaatgctcagcct accatgccatgtactcatgatcctaaagatgacgatgatgatgacttgtttttaacacag gcagatccaattgatatggatttgtgctcacagttggagactgatatacatgttggcaaa ccccaagatatctgttcgtccagtgcggttgatcattcgacatcagttccccagcagatg gatgtatcaaaatgtagttttaaggactgcaccgagtttgtcacagtttctggtgataag tgtcctatacattctgctgctgagaaaaaagaggatcacatgtttgctcgccctggtttg cctccttctcttcaaaaagtatccagaccttccactgctaaagtttatagttctgggaca acttctcgaactgccagccttacaaaagatcttgaaagtctcccaaagcacctacctact gcaaaagctaaaccatcagtgcctagaccaactgtgcaatctcctgcccaaaacaagacc ccagtttatcagagtacaagcaatgtgctgaaacctctgatcaaccaaaacaacatcccc atacagtgcagttctaattctgttcaagggaccagaatgaatcctgctgcaatccgaaca ccacagtgggaccagacctggttactgcaacaagtgctgaactggacttttgacatgttt gacaacattggacagtttgggccccccaacaaactttgtcagttgccgttgttaaaagta ccgctcaggttttcagattacgcagagtacttcagtgtcttttgcccattgatgcttctg aacacgtttgaatcgctggcacaggaatgggcattaaaacaaccttcactgacttcctac ttgtgcaagcttcacttgcaaaatttctacagtgaaaaccagatgaacagaggagaattc caagtcttgattcgaaatgtggatttaaatatgcagtggctcccaaaagaaggcgatctt gtattcctgctagtgcctgagcctccaggcacatcgcccagagaagagagtgagtcacaa ggacccataacttacaacactggtcatgtgtcccgttttacgcgcactcaatacacacag accttggagaaggagcagtacacactgtgtgagctgagcattcacacccatataaatctc ttgccttactgcaagcaacaagtacagtgtgcagtgattggcagcttgataactactcag aggcagtacaaagctatgattcagctgcagaggaaccctttatttaagcctattatctgt cctaccccaaatgatttccttccacgaaataagcttgaaaaccagggcaatttgcttccc gtttcgagagagtacaacagtgaccaaagaaacgccattgagaatgcctatgctatggtg acacagcacccccgattgccaagaatatgtatgatctatggacctcctggcactggaaaa tccaagactattgttggcctgctctatagaattctcatggagagtaatattacagatcag aacttcaatgccaagaacaagagaaaccgagtacttgtgtgtgccccatccaacgctgcc ctggatgatctgatgaagaagatcatattggagtttaaggaaaaatgtcgtgataagaag aatactctgggaaactgtggtgacattaacttggtcaggttgggtttcgagaagaccatt tcttcggacgttgtgaaatttagtctggactgccaagtgaactacagaatcaacaaagct tctcaggatctcgctgtgatcaagcagaaggaagcgttggataaacagctggatgaatta tcccatcagagagctatggaaaggtgtcacaagaacacgtgtgaagagttggatcagaaa attgccagactgacaagggagaggcagtatgtagccaatgtgctaaaggagcaacgtaga aggcctcaggagtttcagcggaatgtcattttggagtctcatgtcatttgctgcacactg agcaccagcggtggcatcctattggaatcggccttcaggcagctgggacaagagccattc agctgtgtcatcgtggatgaggctggacagtcatgtgaagtggagacgctcattccactc ctccaccgctgttgtaaattggtgttagtgggagatccagaacagcttccaccaactgtt atatcaatgaaagcagaggaactaggttatgggcaatctttgatgtctcggctctgccaa atcttagaagcctctggctccaatcctccaatccaacggctgacattacaatatcgtatg caccctgatatttgcctctttccttccaaacacttttacaactcaatactgaaaactgat agggcaacagaggaaatccggtgctcctcagactggccattccaaccttacatggtattt gatgtttctgatggttatgaaacgaaagagaaggagtccttctccaacctatccgaaatc gaaatggcagtggccctaataaagcttattaagagcaagaaaaaggagttctgcttccga aatattggcatcatcaccccgtaccgtgctcagaaaatcaggcttattgctgagcttaag aaaacctttggtgataactcaatgccaggcgaagtggacacagttgatggtttccaaggt cgacaaaaagattgtataattgtcacatgtgtacgagccaactcaatccaaggctgcatt ggatttttggccagtagacagcgtttaaatgtgacaattacaagagccaaattcagcctt ttcatcctaggaagcctccgaacactgatggagaacaaggactggaaccatttaatccaa gacgcccagcgtagaggtgctcttgtaaaaacaaagcaggaacattaccagagagatgtg aacagaatactgaaattgaagcctgtagtacagaggactacttcttttcctcacactaaa ccagtagtagtccacacacctccagtggaagcaccatgcagaggcatcaatactctatca gtaccacctcccaggagacctatagctcacccagctgtagctgtaaggcagcacaattcc aggtctctgtcagtacccccgatgtcggaaaagaaaatgcccagccatgtgggacctcct tctattcctttagcatcaagtggaaagctgcgagatcccagactggcacgccggtgtgaa ttaacacggagtaacagcacaccaccatctagtctgcagcagagttctgataaaaatgtt tcccaaagtcgcgtctatcagaactttcctccaacttcagtcacaggagtcaaacgacct tcgcagcctgcacacagagatccgaggtccagccaactacgaaatgaaggccgagatcac gactatcgaggtcataaagaccaggaatacaagaaaaggaaagtctcttag

DBGET integrated database retrieval system