Rana temporaria (common frog): 120914354
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Entry
120914354 CDS
T07929
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120914354
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtem01009
]
120914354
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtem04515
]
120914354
Protein phosphatases and associated proteins [BR:
rtem01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120914354
Cell adhesion molecules [BR:
rtem04515
]
Cadherins
Protocadherins
120914354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
LapA_dom
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
120914354
NCBI-ProteinID:
XP_040180960
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All DBs
Position
9:complement(172480580..172506219)
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AA seq
887 aa
AA seq
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MLPSPPEQNMESIQKYFSLLTIIFSTLDFPGVTAELIFHAHEEQDEGTFIGNVRESIISP
TAVRFKLLAHTDHFDLDAQSGDLYTTSNKLDRELLCPSETLDQCSMALDIFTSSQEYAEF
SKVKLFILDINDNAPYFLEQSYTISIPEDTTLGTKFHVDHLAKDPDIQENGALSYLLVSP
GDIFSLDYRSELISLVLMKSLDRELQSEHRMTLMAVDRGKPPLSGTTTFVVKVTDVNDNC
PFFLANNISVHLPRDASIGTTVAQLTAIDKDIGENSVIQYHYSYRVSESIRSLFHLDSAS
GTITLSESLPDQISQYKLTVLAFGYGCAPAMATVTVQLEIKKQEPKMEFRFIASQHEGGV
YIKEDILPGSIIAILEVTDPDDSIKRPLSITGPSPFLLKPSDSSPNTYLLLTSTPVDFES
EDRFDIHIVGHSTLDESVTYTENLTVLIEDVNDNPPKFEQSLLEISVEENNPPGVSLLRV
FASDVDSGPNGELSFYLEHEESNEFSINSSNGVLKALVSFDREKEPSYSVRIIVNDHGLP
SKNDSCLIVINVLDQNDNPPVFSSKEFIFYIPENLPHGGNVGILNVTDVDRGLNGDFSVA
LLNKTSLFSFNQDTILRSQGSFDYERERMYELWVEAKDKGSPSLSSRAKVLVFLLDVNDN
APLIVLPESNFSYVLVPPDTSKGSPVTKVHAVDYDTGMNGAITYSEFGEMSPSTDLFKID
MHSGNITLKESIMDHQCGLYQLLVKASDQGFPEALSTIVRVNILLNQSISNRTYLESLIM
SKTVITQESQVILLNPCPQNPQTMAMFSWSLTAPIALAVVSVFVICCMMGTLLFLYSRRK
NSRKKQSPDVPQSPDVQVPLQINADYCAKDWDEVKYCKSSETPLTHQ
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgtctcctccggaacaaaacatggaatctatacagaaatacttctcacttctt
accatcatttttagcaccctggactttcccggagttacggcagagcttatattccacgcc
cacgaggagcaagatgaggggacttttattggaaatgtacgcgagagtattatatcacct
acggcagtgcgatttaaactcttggcacatacagaccatttcgacttggacgcccagagc
ggagatttatacacaacatctaataaactcgacagggaattgttgtgcccttcggaaacc
ctggaccaatgttccatggcactggatatcttcacttcatcccaagaatatgcagagttt
tccaaagtgaaactttttattctggatatcaacgataacgccccttattttttagaacag
tcctacaccatttccattccggaggacacaaccctagggaccaaatttcacgttgaccac
ttggccaaagacccagatattcaagaaaatggagcactctcgtatcttttggtgagccca
ggtgacattttttctttggattatcgatccgagctgatatccttggttctaatgaaatct
ctggatagagaattacaaagtgaacaccgaatgactttaatggcagtcgatagaggaaag
ccgccattgtctggaactactacttttgtcgtaaaagtaaccgacgtgaatgataactgc
ccctttttcctcgcaaacaacatttctgtgcaccttcccagggacgcatctattggcacc
actgtggcacaacttacagccattgacaaagacataggtgaaaatagcgtcattcagtat
cattatagctacagagtttctgagtccattcgaagccttttccatctagatagtgcaagt
ggtacaataaccttgtccgagtcattacctgatcaaataagccaatataagcttactgta
ctagcctttgggtatggctgtgcaccagcaatggcaacagtcacggtacaactggagatt
aaaaaacaagagcctaaaatggaattccgcttcattgcttctcaacacgaaggtggtgtc
tatattaaggaagacattctgccgggttcaatcattgccatcttagaggtcacagatccc
gacgacagcatcaagagacctctttccattactggaccttcacctttccttttaaagcct
tccgattcttctcccaacacctacctgctattgacctccactccggtggattttgagtca
gaggatcgttttgacatccacattgttggtcattcaactttggatgaatctgttacctac
accgaaaacctcacagtgctcatcgaggatgtaaatgacaaccctcccaagtttgaacaa
agtcttctagaaatatctgttgaggaaaataatccaccaggagtatcgttactgagggtc
ttcgcttccgatgttgacagtggaccaaatggagaactgagtttttatttggaacatgaa
gaatcaaatgagttttcaattaacagctccaatggggtcctaaaagctttggtgtctttc
gacagagaaaaagaaccttcgtattctgttcggatcatagtcaacgaccatggtttacca
tcaaagaatgattcttgcctaattgttatcaacgtcttagatcaaaatgataatcctcca
gttttttcttccaaggagtttatattttatatccccgaaaatcttcctcacggaggaaat
gtgggaattttaaatgtaactgatgtggatcgtggactgaatggtgacttttctgtcgct
ttattgaataagacctcgcttttttcatttaaccaggatacaatcctcagatctcaaggt
tctttcgactatgaaagagaaaggatgtatgagctttgggtggaagccaaagacaaaggg
agtccatctttgtcctccagggccaaagttcttgtctttttgctggatgtaaatgataat
gctcctttaatagttctcccagagtcaaacttctcctatgtgttagtacctccagataca
tcaaaaggatctccagttaccaaagttcatgccgtggattatgacactggcatgaatggg
gccataacctacagtgagtttggtgaaatgagccctagcaccgatctttttaaaatcgat
atgcattcaggtaacattacattaaaagaaagtatcatggatcatcagtgtggcctttat
caactcctggtgaaggccagtgaccaaggctttcctgaagccctttcgactattgtgcgg
gtcaacattctactcaaccaaagcataagtaaccggacctaccttgaatccttgattatg
agtaagacggtcataacccaggagagccaagtcatcttgttgaatccatgtccacagaac
ccccaaaccatggccatgttctcctggtctctgacagccccgattgcccttgccgttgtt
tctgtatttgtcatatgctgtatgatgggaaccttgctgtttctttattcaaggaggaaa
aactctaggaagaagcaaagcccagatgttccccaaagcccagatgtacaagttccatta
caaataaatgcggattactgtgccaaagactgggacgaggtcaagtactgcaaatcctct
gaaactcctttgacacatcagtaa
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