Rana temporaria (common frog): 120914367
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Entry
120914367 CDS
T07929
Name
(RefSeq) protocadherin-11 X-linked-like isoform X1
KO
K16498
protocadherin delta 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120914367
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtem01009
]
120914367
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtem04515
]
120914367
Protein phosphatases and associated proteins [BR:
rtem01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120914367
Cell adhesion molecules [BR:
rtem04515
]
Cadherins
Protocadherins
120914367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
RibLong
K319L-like_PKD
TMEM154
Y_Y_Y
He_PIG
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
120914367
NCBI-ProteinID:
XP_040180982
LinkDB
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Position
9:180647741..181779609
Genome browser
AA seq
1225 aa
AA seq
DB search
MDLLSATYILAVFIACIVYESGAQEKNYIIREEQGENISIGNLLRDLNLTLDPDIALSTP
LQFKLVYKTGDVPLVRVEENTGEIFTTSNRIDREKLCAGIFTENKCFYEVEVAVLPDEVF
RLVKIRFLIEDINDNAPLFPSTVINISIPENTAVNSRYSVPSAIDPDVGKNGIQNYDLLK
GQNVFGLDVIETPEGDKWPQLIVQQSLDREQRDTYVMKIKVEDGGNPPRSSTAILQVTVT
DVNDNRPVFKDKDIEVNIPEDAPVGTSVSQLHATDADLGSNAKIHFYFGNQISNLARRHF
AIDNNTGLITVKEPLDREEAHYHKLTVLASDGSSTPSRATVTINITDINDNIPSIDTRYI
INPVNGTVQISERAPINTKIALITVTDKDADLNGKVTCFTDHDVPFRLKPVFDNQFLLET
AAPLDFEATREYAIKIVASDSGKPPLNQSAMLLIKIKDENDNPPVFTLPVIGLSFIENNP
PGTELTKISATDADSGRNAELSYMLAPNAPSIFNLDRRTGILTAVRKLDREKQDRYSFTV
IAKDNGVPSLQTNTTVTLSVLDQNDNSPSFTHNEYNFYVPENLPNYGTVGLITVTDEDVG
ENAEFSLSLVNARDNFIIDPHTGVIKPNITFDREQQGSYTFQVKAVDRGTPQKSSTVKVT
IFVEDVNDNKPVFVVPSTNYSYELVPSSANPGSVVTRVFAVDNDTGVNADLRYSIVGGNP
RGLFTIDERSGNISLKEKILAMDHGLHRLVIKVNDSGKPEPFHAIALVHLFVNETVTNGS
YIQELVRRHMETPVGQNIGEGDITPQTNDYVKIIIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKNKQTGEWVSPNQENRQIKKKKKKKKRSPKNLLLNFVTIEETKTEDPAHEHING
TLDIPVELEEQTMGKYNWGTTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVPPKKHHV
IQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKAPGPIHTRQHGKETGKLQSP
LKESNLENWIQPPVQRRVTFHLPDGSQESCSDSGLGDQEPSGSSNASQPLPLGFGQEEYY
EQTSANSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSDNCWMPPSLTQYQQ
SNPPLPSFGIQQGWGRGRLDGVHTLGRPVPKDDIDKGVSRPQFYNTCERHCSIDDPVKVI
PLANFTPGSAPSSGSNSIFVNEHQL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggacttgctatcggcgacctacattttggcggtgtttatagcctgtatcgtctatgag
tccggtgctcaggagaagaattatatcatacgcgaagaacagggcgaaaacatatcgatt
ggaaacttgttacgggacctaaacttaacactcgaccccgacatagctctctccacccct
ctccagttcaaattggtctacaagaccggtgatgtccccctggtgcgggtcgaggagaac
accggtgagatttttaccacctccaaccggatagaccgcgagaagctttgcgctgggata
tttacggaaaacaagtgcttttatgaggtggaagtcgccgttttacccgacgaggtcttc
aggctggtcaagatccgctttttgatcgaagacatcaacgacaatgctccacttttcccc
tccacggtcattaatatctccatcccggaaaacactgccgtcaactctcggtactctgtg
ccatccgccatcgatccggatgtgggcaagaacggaattcagaactacgacctgcttaag
gggcagaacgtgtttggacttgatgtcatcgaaactcccgaaggtgacaagtggccacag
cttatcgtccagcagagtttggacagggagcaaagggacacttacgtcatgaagatcaaa
gtggaagacgggggtaacccccccagatcgagcactgccatcctacaagtgacagtcacc
gatgtcaatgacaaccggcccgtgtttaaggacaaggacatagaggtgaacattccagag
gacgcccccgtggggacctccgtgagccaacttcatgcgacggacgccgacttgggctcc
aacgccaaaatccacttttatttcggcaaccagatatccaatcttgccaggcggcatttc
gccatcgataacaacactggattaataacggtgaaagagccgctggaccgtgaggaagct
cactatcacaagctgaccgttttggccagcgatggcagttcaaccccatcgagggccact
gtcaccataaacatcacagacatcaatgacaacatcccatcaattgatacaaggtatata
ataaatcccgtgaatggcaccgtacaaatatcggagagggccccgattaatacaaaaata
gccttgattaccgttacagacaaggatgccgatctcaacggcaaggtgacctgcttcaca
gaccacgatgtcccattcaggttaaaaccggtttttgacaatcagttcttgctggagacc
gcagcccctctggatttcgaggcgacaagggaatacgccatcaagatcgttgcctccgat
tccgggaaaccaccattaaaccagtcggccatgcttcttattaagataaaggatgaaaat
gacaatcctccagttttcacgcttccggtgatcgggctgtccttcatcgaaaacaaccct
cccggaaccgaactcaccaagataagcgccaccgacgcagatagcggtcgcaacgcagaa
cttagctacatgttggctcccaatgctccgtctatattcaaccttgacaggaggacgggg
attcttacagcggtcaggaagctggatagagaaaaacaagaccgatactcatttaccgtt
attgcaaaggacaatggagtaccgtccttgcagaccaataccacagtgaccttatccgtg
ctcgaccaaaacgataacagcccctccttcacccataacgagtacaacttctacgttccg
gagaatctgcccaattatggaaccgttggtcttatcacggtaacggatgaagatgtcggg
gagaatgctgagtttagtctgtcgcttgtcaacgccagggataattttataatcgacccc
cacacgggcgtcatcaaaccaaacatcaccttcgacagggaacaacagggttcatatact
tttcaagtaaaagcagttgaccggggcactccccaaaaatcttcaacggtgaaagtgacc
atctttgttgaagacgtcaacgataataagcctgtgtttgttgtgccatccaccaactat
tcatatgagctagtgccctcatcggccaaccctggatctgttgttactcgggtttttgct
gttgataatgacacaggggtgaatgctgatctacgctacagtatagttggtgggaaccca
aggggtttgtttacaatcgacgaaaggagtggcaacatcagcttgaaagagaaaatcctg
gctatggaccatggtctacatcggcttgttattaaagtcaacgattccggaaaaccggag
ccctttcatgccatagctctggtgcacttatttgtcaatgaaaccgttaccaatggatct
tacattcaagagcttgtgcggagacacatggaaacgccggtagggcagaatatcggggaa
ggagatataacgccacaaaccaacgactacgtcaaaatcatcattgccatcattgcaggc
acgatgacggtgatcctggtcatttttgtcaccgctttggtccgttgccgccaaacccca
aggcacaaagtggtccagaaaaacaagcagaccggcgaatgggtctccccaaaccaagaa
aaccgccagatcaagaagaagaaaaagaagaagaagcgctccccaaaaaacctcctcctt
aattttgttaccatcgaagagactaagacggaggatcctgcccacgagcacatcaacggc
accttggacatcccggtggagttagaagaacagactatgggaaagtacaattggggcacc
actccgacgaccttcaagccagacagcccagatttggccaagcactacaagtctgcttct
ccgcagcctaccttccagatcaagcccgagacgccggttccgccaaaaaaacaccacgtc
atccaggagctgcctcttgacaacacatttgtggtgggttgtgactcgttgtctaagtgt
tcctcaagcagctcggatccgtacagtgtctcagaatgcagctgtcaaggaggctttaaa
gctcccggtccaatccacacacgacagcatggaaaagaaactggaaaacttcaatcacct
ctgaaagaatcgaaccttgagaattggattcaaccaccggtccagcgccgcgtcacattt
cacctcccggacggctcccaggaaagttgcagcgacagcggattaggagaccaggaaccc
agcggcagctccaatgcttcacagcccttgcccctcggcttcgggcaggaggaatactac
gagcaaacctcagccaacagccggacagagggggatggaaactccgacccagagtctacc
attgaagtcaaccttcagaaagccttggcggaagcatcggagacctgcacccaggagtgc
ctcatcttaggccactccgacaactgctggatgccgccgtcgttgacccagtaccaacag
tccaacccgcctttgccgtcgttcggcattcaacaaggatggggaagaggacggctggac
ggagtgcacacccttggaaggcctgtgcccaaggatgacattgacaagggggtttcaaga
ccccagttttacaacacatgcgagagacactgttccatcgacgaccccgtcaaagtgatc
cccttggcaaacttcacgccaggctcggcgcccagttcaggaagtaattcaatctttgta
aatgagcaccagctctga
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