Rana temporaria (common frog): 120915184
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Entry
120915184 CDS
T07929
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120915184 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120915184 (DDX6)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120915184 (DDX6)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120915184 (DDX6)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120915184 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
120915184 (DDX6)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120915184 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
120915184
NCBI-ProteinID:
XP_040181402
LinkDB
All DBs
Position
10:73892235..73973837
Genome browser
AA seq
481 aa
AA seq
DB search
MSTTRTENPVLMGLSSQNGQLRGPVKQSQGPGNGGTQTQQINQLKNASTINNGSQQQAQS
MGSGIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDVIQAMVIVPTRELALQVS
QICIQVSKHLGGVKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQ
MIVLDEADKLLSQDFVQIMEDIISTLPKNRQILLYSATFPLSVQKFMSSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEEK
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccacgagaacagagaaccctgttttaatgggtctgtccagtcagaatgggcag
ttgaggggcccagtgaaacaaagccaagggcctggaaatgggggaacacagacacagcaa
ataaaccagctgaaaaatgccagcacaatcaataacggaagtcagcagcaagcacagagt
atgggcagtggtattaaacctggtgacgactggaagaagacgttaaaactccccccaaaa
gatcttcgaatcaagacttcggatgtcacctccacaaaaggaaatgagtttgaagattac
tgtttaaaaagagaactgctcatgggtatttttgaaatgggatgggaaaaaccatctcca
atccaggaggagagcattcctattgctttgtctggtagggatatcctggctagagctaag
aatggaactggcaagagtggagcctacctcattcccttacttgaacggctggacctaaag
aaggacgtcatacaagcaatggtgattgtaccgactcgagaacttgcacttcaggtcagt
cagatctgtatccaagttagcaagcaccttggaggggtaaaggtcatggcaacaactgga
ggcaccaacctaagagatgatataatgagactggatgacacagttcatgtggtgatagca
actccagggaggattctggatctcatcaaaaaaggcgtagctaaagttgaccatattcag
atgatagttttagatgaggctgataaactgctttctcaagattttgtacagataatggag
gatattatttctacgctacctaaaaacagacagattcttctttattcagccacttttcct
ctcagtgtacagaaattcatgtcctcccacttgcaaaaaccatatgagatcaacctgatg
gaagagcttacgttgaagggagttacgcagtactatgcctatgttacagaaaggcaaaag
gttcactgccttaacacacttttttcaaggcttcagattaaccagtcaataattttctgc
aactcatctcagcgggtagagctgttggccaagaaaatatctcagctcggctattcgtgc
ttctatatacatgcaaagatgagacaggagcacaggaatagggttttccatgatttcaga
aatggcttatgccgaaaccttgtttgcactgatttgtttacccgtggtattgatattcaa
gctgtgaatgtggtgataaactttgactttccaaagttggcagagacctatctacatcgc
ataggcagatcaggtcgttttggccaccttgggcttgccatcaacctgatcacctacgat
gacagatttaaccttaaaagtattgaagagcagttgggaacagagatcaagcccataccc
agcagtatcgacaaaagcctctatgtggcagagtatcacagcgagtctggagaggaaaaa
cgttaa
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