Rana temporaria (common frog): 120916191
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Entry
120916191 CDS
T07929
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03018
RNA degradation
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120916191 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
120916191 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120916191 (LSM4)
03041 Spliceosome [BR:
rtem03041
]
120916191 (LSM4)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120916191 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
120916191 (LSM4)
Spliceosome [BR:
rtem03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120916191 (LSM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
120916191
NCBI-ProteinID:
XP_040182973
LinkDB
All DBs
Position
1:complement(445845589..445872825)
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AA seq
140 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVMSKGRGRGGMQQQKQMKGRGGGGPGRGGVFGGRGRGM
PGGGRGGSQDKKPGRQAGKQ
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttatctttgttgaagacagcgcaaaaccatcctatgttggttgaattaaag
aatggtgaaacctacaatgggcacttggttagctgtgacaactggatgaacatcaatcta
cgtgaagtaatttgtacttctagggacggtgacaaattttggagaatgcctgagtgctac
atacgtggtagcacaattaaatacttgcgcatccctgatgaaatcattgatatggtgaaa
gaagaagtgatgtcaaaaggcagaggtcgtggtggcatgcagcaacagaagcagatgaaa
ggaagaggaggtggtggacctggacgcgggggggtttttggtggaagaggtagaggaatg
cctggaggtggcagaggtggttcccaggataaaaagccaggacgacaagctgggaaacaa
tga
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