Rana temporaria (common frog): 120917189
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Entry
120917189 CDS
T07929
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120917189 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120917189 (CSTF3)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120917189 (CSTF3)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
HAT_Syf1_CNRKL1_C
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
120917189
NCBI-ProteinID:
XP_040184228
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Position
11:29907030..29986547
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AA seq
734 aa
AA seq
DB search
MMASGESTAEQAAEYVPEKVKKAEKKLEDNPYDLDAWSILIREAQNQPIDKARKTYERLV
AQFPSSGRFWKLYIEAEVKAKNYDKVEKLFQRCLMKVLHIDLWKCYVSYVRETKGKLPSY
NAGFRLQDDEARKCFMEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ
RITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINVHLAKKMIEDRSRDYMNARRVAKEY
ETVMKGLDRNAPSVPPQNTPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC
LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAASIYERAISTLLKKNMLLY
FAYADYEESRMKYDKTHSIYKRLLEIEDIDPTLVYIQYMKFARRAEGIKAGRLIFKKARE
DIRTRHHVYVTAALMEYYCSKDTSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT
RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRYTAFKEEYEGKETAL
LVDRYKFMDLYPCSASELKALGYKDVSRAKLASMIPETVVTPSIAPSSKDEIDRKPEYPK
PDTSQMIPFQPRHMAPPGLHPVPGGVFPVPPAAVLLMKLLPPPLCYQGPFVQVDEVMDIF
RRSKLPETVEEAIRVITGGQAELLQETNGPVEVNALISKSLKRPNEDSDDDEEKGAVVPP
VHDIYRARQQKRIR
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttccggggagagcacagctgagcaggctgcagaatacgttccggaaaaggtt
aagaaggcagagaagaagttggaagataacccatatgacctcgacgcttggagcattctc
attcgagaggcacagaatcagcctatagacaaagcccggaagacttatgagcgcctagtg
gcccagttcccaagttctggcagattctggaaactttacattgaagctgaggttaaagct
aaaaattatgacaaggttgaaaagttatttcaaagatgcctcatgaaggtcttacacata
gatctatggaaatgttatgtgtcctatgttcgggagaccaaagggaagcttccaagttac
aatgctggcttcagactacaggatgatgaagctagaaaatgctttatggagaaaatggca
caagcatatgactttgcgctagataaaattggcatggaaataatgtcatatcagatctgg
gttgattacatcaattttttgaaaggagtggaagctgtgggatcttatgcagaaaaccaa
agaatcacagctgtacgcagggtctaccagcgaggttgtgtcaatccaatgattaacatc
gaacaactctggagagattataacaagtatgaagagggtattaatgtccatcttgcaaag
aaaatgatagaagatcggagtagagattatatgaatgccaggagagtggctaaggaatac
gagacagtaatgaaaggcttggatcgcaatgctccctccgtgcccccacagaacacccct
caggaagctcaacaggtagagatgtggaaaaaatacatacagtgggaaaaaagtaaccct
cttcggacagaagaccagaccctcataacaaaaagagtcatgtttgcctatgagcagtgc
ctgctggtgttggggcatcatccagacatttggtatgaagctgcacaatatctggaacag
tccagtaagctgctggccgagaaaggggatatgaacaatgctaagctgttcagcgatgaa
gccgccagtatatatgaacgtgcaattagcaccctgcttaagaagaatatgctgctgtat
tttgcctatgccgactatgaagagagtcgaatgaaatatgataagactcacagtatatat
aaaagacttcttgaaatagaggacattgatcccaccttggtttatattcaatacatgaag
ttcgcaaggcgggccgagggcatcaaagctgggcggttgatcttcaaaaaagcaagagaa
gatattcggacccgccatcatgtatacgtcacagcagccttaatggagtattactgtagt
aaggacacatctgtggccttcaagatctttgagttaggattgaagaaatatggagacata
ccagaatatgttctagcatatattgattacttatctcacctcaatgaggacaacaacaca
agggtattatttgaacgtgttttaacatcagggagtctgccacctgagaaatctggtgag
atctgggctcgattcttggcatttgagagtaacattggagatctagcgagtattctgaaa
gtagagaagaggagatatactgcattcaaagaggagtacgaggggaaggagacggctcta
ctggtagacaggtacaagttcatggatctgtacccgtgttctgcaagcgaactcaaagcc
ttaggatataaggatgtctcccgtgccaaattagcatctatgatcccagaaacagtggtg
actccttccatagccccatcttcaaaggatgagattgacagaaaacctgaatacccaaaa
ccagacaccagccagatgattccttttcaaccaagacacatggctcctcctggacttcac
ccagtgcctggaggagtgttcccagtgcctcctgctgctgtgctattaatgaagctgctt
cctccacccctgtgttaccagggtccctttgtacaggtggatgaagttatggacatcttt
cgcaggtctaagcttccagagactgttgaagaagccattcgagtcattactgggggccag
gcggaactgctgcaggagaccaacggaccagttgaagtgaacgccctgatcagtaaatca
ctcaaaagacccaacgaagattctgacgatgatgaagaaaagggtgctgtagtgcctccg
gttcatgacatctacagagcccggcagcagaagaggattcggtga
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