Rana temporaria (common frog): 120917394
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Entry
120917394 CDS
T07929
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtem03036
]
120917394 (CHD9)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120917394 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HDA2-3
HTH_CHD1_Hrp3
DEAD
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
120917394
NCBI-ProteinID:
XP_040184597
LinkDB
All DBs
Position
11:complement(62425272..62714541)
Genome browser
AA seq
2879 aa
AA seq
DB search
MTDPMMDFFDDTHLFDETLGLSDDAFAQHDAVSLVDELNLGAEFEPLHVDSLNHVPDSQT
HQKISEFDALSQFDSIKLHPVNQSYSSPVESVLSPRSQFSCSPIHPPSQGNGIFSDDGSP
MWGHQTATSIPSQNGSPFHQHGHTQTMQQSKGYVTHHDFALFQASEQQRVSAPQPQHNRH
SITACQETLTQQKNFIDINVSLPHRTSNAQHTPMVNHTNLQESLPLEQFSQSAASLHFCS
NPIGTQHESTFDSHSPAPCSVNATAPFSAHYPFSNNHLNHGTHSLSDFTESPGFPELGTK
QEPSHHVLNPSEQLHSNDFHMVHSSHSQGNYNGTKMSPMTISFPSQDGSSVRLSHFNDHM
ESNGFSPLEDNLLQQVNAQTEPFTGLDPEDLLQEDLLPHFDDAAYVQERSNSHQAVIEHP
DNMAHSEQHPMSVPNDLINSQRLSQHNPWSSTACNHLSLIDRQHVTSQGKPPSSRKLDGS
RTYHKLPNSKVRSVSERRPKKKVDSESKQEKANRIISEAIAKAKERGERNIPRVMSPDNF
PTVSSSEGKEEKRGRKAKSKPKEKVSKKTKAGLTSKLKEKKKIGKLIITLGRKQKRKLES
SDDVSDIDTTSRKKDEDPQVNVSCWGISLVHRQSEKKRRSNRQIKRKKYAEEVEGKHSED
EPKANVKTKKGSNTLPAEQPLQLFVENPSEEDAAIVDKILSSRVIKKETPSGMLVEVEEF
YVKYKNYSYLHCEWATEQQLLKDKRIQQKIKRFKIRQAQRAHFFADMEEELFNSDYVEVD
RVLEVSFCEDKDTGEPVIYYLIKWCSLPYEDSTWELKEDVEQSKIEEFEQLQAVRPDTRK
VDRPPPNFWKKINQSREYKTGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSI
TFLHEIFLTGIRCPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFR
DSQGRVIRGTYKFNAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLM
NLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKP
MMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGVGQANVPNLVNT
MMELRKCCNHPYLIKGAEEKILGEFRETHNPMALDFYLQAMIQSAGKLVLIDKLLPKMKA
GGHKVLIFSQMVRCLDILEDYLMHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL
CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREM
FDRASLKLGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCE
EDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDS
VSGRNSLVIDTPRIRKQTRPFSATKEELEELSEAESEGDDKPKLRRPYDRSNGYGRTECF
RVEKNLLVYGWGRWRDILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDDKIKSFIWDL
ITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKSQTSTFDIHKAEWLRKYNPEHLLQDDGY
KKHLKHHCNKVLLRVRMLYYLKQEVIGAHSMKVLEGGDVSEINLWVPEPDHSELPVNWWD
AEADKSLLIGVYKHGYEKYNTIRADPALCFLERAGKPDEKAVAAEQRANDYIDGDVEDPE
YKPAPALFKDDMEDDASSPGDLIIADGDGQVPEGDKGYWPTQSALTTRLRRLITTFQRTS
KFRQIQQIPTMFPIHATVTQAPYEDASLNPKVAAKIERQQRWTRREEADFYRVVSTFGVV
FDPGRGQFDWTKFRAMARLHKKTDESLEKYLYAFIAMCRRVCRLPSKEDMVDTSVSIQPI
TEERASRTLYRIELLRKVREQAIRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAK
HGVSRTDYHILRDPELSFMASQKNYNHNKGTSSTSLIVPPNQLPLSSSPLTPQSRTHELK
GSPNEEVKLKNDAGKEDIVMAEEEPMKMKEEALSLVNGPLTPTGEPRPAVKSETDRRMVA
ARTEPLTPNLTSKKQRIGKLGSASSSDTESDSNRSTCSSRSSSSSSSSSSCSRSGSSSSS
SSSSSCSSSSSSSSSSSSSSSSSSEDSDSDDGNEQKCERVPHVKAYDEESVASLSTIQDE
TQDSFQLDNGISSSNYLAQGGYMFAAAHWPKDRVIINRLDSICQAVLKGKWPTPRKTYDG
VRVVTFYTNQLLDSPGAATEYSESGVQPPTCVAIKAEPCQSPQMSKVKKHVPEKEFTVKI
NDEGGLKLTFQKQGIPQKRPLDGEEAMGQQQYLARLQDLQNASEASLVTFPKPLAASGTS
NTLPTSGLNGMTSDAQPTVKKRRGRRKNVEGVDILFMNRNKMLNHVNSAVDPSLSQHLPG
PPVLPGTLDADSPVPVINLKDGTRLAGDDAPKRRDLESWLKAHPGYVEDRGASIPRMQLH
DGRPKQKRHRCRNPNKLDVNSLTGDERVQLINKRNARKVGGAFAPPLKDLCRFLKENPEY
GVAPEWGDVVKQSGFLPDSMFDRILTGPVVREEVSRRGRRPKSEIAKAAAAATASGNSMN
VSPLLANGLIPGMDISSYRALQQNFQSLQSLQLTAGLIGLPAGLSASSGDAKNMAAMFPM
LLAGLPNLLGMGNLLSKSSEPSAKEKEKNCTDECKEGEKGKERTMSPSGDKARQNSSPPS
TSMGTAVQAGSLSINPLLLPNILYPGMLLTPGLNLHIPTVPQPNIFEVQNTSKDAGPVVT
PDSTAKPPPAPSQDKKVKNEVGSQNENSTDDCSEKAEPSSGSNSPSSSSAEDSDSSEED
NT seq
8640 nt
NT seq
+upstream
nt +downstream
nt
atgactgatccgatgatggatttttttgatgacacacacctatttgatgaaacattgggc
ttatctgatgatgcatttgctcagcatgatgcagtgtccttggttgatgaattaaacctt
ggagcagagtttgaaccgctccatgtcgattctttaaatcatgtgccggattctcaaacg
caccagaaaatcagtgagtttgatgcactcagtcagtttgattctattaagttacatcca
gtaaaccagtcttacagtagcccagttgagagtgtcctgtctccaagatcacaattcagc
tgctctccaatacatccaccaagtcaagggaatggtatattttctgatgatggaagcccc
atgtggggccaccaaactgccacaagtattccaagtcaaaatggctccccattccatcaa
catggacacactcagactatgcagcaaagtaaaggatatgtaacgcaccatgattttgcc
ttgtttcaggccagtgaacagcagagggtctcagcaccacagccacagcacaataggcac
agtatcactgcgtgccaggagaccctgacccaacaaaaaaacttcatagatattaatgtt
tctttgccacataggacttctaatgctcagcacacaccaatggttaatcatacaaattta
caagagtctttacctttagaacaattttctcaatcagcggcatcattgcacttttgtagc
aaccctattgggacacaacacgagagtacgtttgatagccactctccagcaccatgttct
gtgaatgctacagcaccattttcagctcattatcctttctctaacaaccaccttaatcac
ggcacgcattctttgtccgattttactgaaagcccaggatttccagaattaggaactaag
caggaacctagtcatcatgtcctcaaccctagtgaacaattgcattctaatgatttccac
atggtgcattcttcacattctcagggtaactacaatggaacaaaaatgtctccaatgacc
atcagctttccatcccaagatggttcttctgttcggttgagtcactttaatgatcatatg
gagagtaatggcttttcacctttggaagacaacctgttgcagcaagtaaatgcacaaaca
gaaccattcacagggcttgatccagaggatttgctacaggaagatttactgccgcacttt
gatgatgcagcctatgtccaagagcgctcaaattcacaccaagctgtgatcgagcaccct
gacaacatggcccacagtgaacagcatcccatgagtgttcccaatgaccttataaactcg
cagcgactaagccagcataatccctggagctccacagcatgtaatcatctcagtctgatt
gatcgacaacacgtgacttcccaaggaaagcctccatcctctagaaagcttgatggttct
cggacctaccacaaactgccaaattccaaggtgagatcggtatctgagaggcgccctaaa
aaaaaggtggattcggaaagcaagcaggagaaggctaatcgtattatatctgaagcaatt
gccaaagccaaggagaggggtgagaggaacattcccagggtcatgagccctgacaacttc
cccaccgtctcctcttcagagggcaaggaggagaaacgtgggcggaaagcaaagtcaaaa
cctaaggaaaaagtgagcaagaaaaccaaagctgggctgacctccaaactgaaagaaaag
aagaagattggaaagttgataattactttgggccggaagcagaagagaaagcttgaatcc
tccgatgatgtctctgacattgacacaacttctcggaagaaagatgaagatcctcaggtc
aatgtgagttgttggggtatttccctagttcataggcaaagtgagaagaaacggagatcg
aaccgccagataaagaggaagaaatatgcagaggaagtggaggggaaacactctgaagat
gaaccaaaggccaatgttaaaaccaagaagggttctaacactctgcctgcagagcaacct
ttacagctgtttgtggagaacccaagtgaagaggatgctgcaattgtggataaaattcta
tcatccagggtcataaagaaagagactccatctgggatgttggttgaggtggaagaattt
tacgtcaagtacaaaaattactcttatttgcactgcgaatgggccaccgagcagcagctg
ctgaaggataaaagaattcagcagaagataaaacgtttcaagatccggcaggcacaacga
gcacacttttttgctgatatggaagaagaactatttaactcagattatgtagaagttgat
cgcgtgctagaagtttctttctgtgaagataaagatacaggagagcctgtaatttattat
ttgataaagtggtgttcccttccatatgaagacagcacatgggaactgaaggaagacgtt
gaacagtccaaaatagaagagtttgaacagctacaggctgttaggccagacactaggaag
gtggatcgaccgccccctaatttctggaagaagatcaaccaatcacgagagtataaaact
gggaatcagctcagagaataccaactggaaggacttaactggttgcttttcaactggtac
aacagacggaactgcattctagcagatgagatgggtttgggtaaaactatccaaagcata
acattcctgcatgagatcttcctgactggcatccgttgccctttccttatcatcgctcca
ctctccaccatcactaactgggaacgagaatttcgcacgtggacagacctcaacgtagtt
gtgtatcatggaagcatgataagccggcagatgattcagcaatatgaaatgtatttccgg
gactcccaaggtcgtgttatccgagggacatacaagttcaatgccattatcactacgttt
gagatgatcctggggggctgcccagaactcaatgctattgaatggagatgtgttataatt
gatgaggcacacaggctgaaaaacaagaactgcaaattgcttgagggtctgaaactaatg
aatctggaacacaaggtgcttctaacaggaactcccctacaaaacacagtggaggaactc
tttagcctgctgcacttcctggagcctctgcgctttccctccgagtctaccttcatgcag
gagtttggagacctcaagaccgaggagcaggttcagaaacttcaggctattcttaaacca
atgatgcttcggcgacttaaagaagatgtggagaaaaaattggcccctaaagaggaaacg
atcatagaggtcgagctgacaaacatccagaagaaatattatagggccatcctggagaag
aacttttccttcttgtctaaaggggttgggcaagcaaatgttcccaacctagtaaacacc
atgatggaactgcgtaaatgttgtaaccacccatatctcatcaaaggtgctgaagagaag
atccttggagagttcagggaaacccacaatcctatggctctggatttctacctccaggcc
atgatccaatctgctgggaagctggtccttattgataaactgctgcccaaaatgaaagca
ggaggccacaaggtgctcatcttctctcagatggtgcgttgtctggacattctagaggat
tatctcatgcacaaaagatatctgtacgaacgcatagatggacgagttcgaggaaacctc
cggcaagctgctattgatcgctttagtaagccagattcagatcgctttgtattcttgctt
tgcaccagggcaggtggtctgggaattaacttgactgctgctgacacctgtatcatattc
gactctgactggaacccacagaatgacctccaggcacaagcaagatgtcatagaattggt
cagaacaaggctgtgaaggtttacagactagtaacaagaaattcttatgaacgggagatg
tttgaccgagctagccttaagttgggtttagacaaagctgtgctacagagcatgagtgga
agagaaaacagtgttggtgggattcagcagctatcaaagaaagagattgaagacctcctt
aggcgtggagcatatggagccatcatggatgaagaagatgaagggtcaaagttttgtgag
gaagatattgaccagattcttcagaggaggacaaagacaatcaccatagaatctgagggc
agaggttcaacatttgctaaggccagctttgtggcttctggtaatagaactgacatctca
ttggatgatccaaatttctggcagaagtgggcaaaaaaggctgaaattgacattgactca
gttagtggacgaaacagtttggttatagacacacccagaatccgcaaacagactcggccc
tttagtgccacaaaggaagaactggaggagctgtctgaggcagaaagtgaaggagatgac
aaacccaaactgcgaagaccgtatgatcgatccaatggctatggaaggacagagtgcttt
cgtgtggagaagaatcttcttgtatatgggtggggaagatggagagacattttgtctcat
ggtcgtttcaagaggcagctaaacgagcaagatgttgaaatcatatgccgagctttgctg
gcttactgtctagtgcactacaggggagatgacaaaatcaagagcttcatctgggacctc
atcactccaacagaagatgggcagacacgagagttacagaaccatcttggcttgtctgct
ccagtaccacggggaagaaaagggaagaaagtgaaatctcagactagcacctttgacatc
cacaaggctgaatggttgcggaaatataacccagagcacctactgcaggatgatgggtac
aaaaagcacttaaagcatcactgcaacaaggttttacttcgagtgagaatgctgtactat
ctcaaacaagaagtgattggtgctcacagcatgaaagttctggagggaggggatgtcagt
gaaatcaatctatgggttcctgaaccagatcattcggagttacctgtgaactggtgggat
gctgaagccgacaagtctcttctaataggggtgtataagcatggttatgaaaaatacaac
actatcagggcagacccagcactctgcttcctggaaagagctggaaagccagatgaaaag
gcagtggcagcagaacaaagggcgaatgattacatagatggtgatgttgaagatccagag
tacaaaccagctcctgctttatttaaagatgacatggaggatgatgcttcatctccaggt
gatcttattatagcagatggtgatgggcaggtgcctgaaggtgataaaggttactggcca
acacagtcagcactgaccacgcgccttcgtcgacttataacaacattccagcgcacttca
aagtttaggcagatccagcaaattccaacaatgtttccaattcacgcaacagtaacacaa
gcaccttatgaagatgcttccttgaatccaaaagttgctgcaaaaatagaaagacagcag
aggtggactcgaagagaggaagctgacttttaccgggttgtctctacatttggtgtggtg
tttgatccagggaggggtcagtttgattggacaaaatttcgagcaatggccagactacat
aagaagacagacgaaagtcttgaaaaatatctctatgcctttatagcaatgtgtcggagg
gtgtgtcggctgccttctaaagaagacatggtggacacatccgtatcaatccagccaatc
acagaggagagagcctccagaactctgtaccgtattgagcttttgaggaaggtccgagag
caggctatacgtcatccacagctgtttgagcgtttaaaactttgccaaccaaaccctgac
ttgcctgtgtggtgggaatgtggtacacatgatagagatttgttaatcggagctgctaaa
catggtgtaagcaggacagactaccacattttgcgggatcctgagctttcctttatggca
tctcaaaagaactacaaccataataaaggaacctcctctacttctcttatagttccacca
aaccagctgccattgtcatcctcaccacttactcctcaatccagaacacatgaactaaag
gggagtcctaatgaggaggttaaacttaaaaatgatgccggaaaggaggatattgtaatg
gcagaggaagaacctatgaaaatgaaagaagaggcactaagtcttgtcaatggccctctg
actcctactggagaacctagaccggctgtcaagtcagagacagacagacgcatggtggca
gcaaggactgagcctcttactccaaacctaacttccaagaaacaaagaattggcaaactg
ggttcagcctcaagttcagacactgaatcagattcaaaccgatccacctgctcctctaga
tcttcctcttcctcatcttcctcctcttcttgctcacgctcaggatccagttcttcctcc
tcttcttcctcctcttgctcctcatcttcctcttcgtcttcctcctcctcttcatcttca
tcgtcttcatctgaggacagtgacagcgatgatggaaatgaacagaaatgcgaacgagtg
ccccatgtgaaggcttacgatgaagagagtgtagcctctctgagcaccatacaggatgaa
actcaggacagctttcaactggacaatggaatctcaagctcaaactatctcgcccaaggg
ggatatatgtttgcagctgcccactggccaaaggatcgcgtaataattaacagattggac
agcatttgccaagcagtattgaaaggaaagtggcctacgccacgaaaaacctatgatggt
gtccgagtggtgaccttctacactaatcaactactagatagccccggggctgccacagaa
tacagtgaatccggtgtacagccccccacctgtgtggccatcaaagctgaaccctgccaa
tcaccacagatgtcaaaggtgaagaagcatgtaccagaaaaggagtttacagtgaaaatc
aatgacgaaggtggcttaaagctgacatttcagaaacaagggattcctcagaagaggcct
ttggatggtgaagaggcaatgggacagcagcagtatttggctcgactgcaggatcttcag
aatgcctctgaggccagtcttgtaacctttccaaaacccttggcagcatcaggtacttct
aatacactgccaacttccggtttgaatggtatgacatcggatgcccagccaaccgtcaaa
aaaagaagaggcaggaggaagaacgtagagggagttgatattctgtttatgaaccgaaat
aagatgctaaatcatgtgaactcagctgtggatccttccttatctcagcatttacctggc
cctccggtgcttccgggaacactagacgcagacagtcctgtcccggtcattaacttaaag
gatggcacaaggctagcaggggacgatgcaccaaaaagaagggatctagagagctggctt
aaagcacaccctggttatgtagaagaccggggggcttccatccctaggatgcagcttcat
gacggtagacccaaacagaagagacacagatgtcgaaatcctaataaactggatgtgaac
agcctcaccggagatgaacgtgttcagctcatcaacaagaggaacgccaggaaggttggg
ggagcatttgcccctccccttaaagacctgtgtcggttcctgaaggaaaatccagagtac
ggagtggctccagagtggggagacgttgtaaaacaatctggctttctcccagatagtatg
tttgaccgtatcctaactggccctgtggtgcgtgaggaagtgagcagaagaggcagaagg
ccaaagagtgaaattgccaaggcagcagcagcagccacagcatctggcaactctatgaac
gtcagccctttgttagcaaatggcctaatcccaggcatggatatttccagctaccgggct
ttacagcagaacttccagagtcttcagtctttgcagctaacagctggattaattggtttg
cctgcagggctctctgcttctagtggagatgccaaaaatatggctgccatgtttccaatg
ctgctagctgggttgcccaatcttttgggtatgggaaacctgttgagcaagtcgtcagag
cccagtgccaaggaaaaagagaagaactgtacagatgaatgcaaagaaggtgaaaaaggc
aaagaaaggacgatgtccccatctggtgacaaggccaggcagaactcaagccctccttcc
acttctatgggaactgctgtacaggcaggttccttatctatcaacccactgctgttaccc
aatatactctacccagggatgcttctcactccaggccttaatcttcacatcccaactgtg
ccccaaccgaacattttcgaagtacagaatactagcaaagatgctggcccagtagtgacc
ccagattctacagcaaaaccacctcctgctcccagccaggacaaaaaagtgaagaatgag
gttggctctcaaaatgagaacagcacagatgactgttctgagaaggcagaaccttcctca
ggatcaaatagcccctcttcttcctcagctgaggactcggattcttcagaggaagactaa
DBGET
integrated database retrieval system
