Rana temporaria (common frog): 120917397
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Entry
120917397 CDS
T07929
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtem03000
]
120917397 (SOX6)
Transcription factors [BR:
rtem03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120917397 (SOX6)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
120917397
NCBI-ProteinID:
XP_040184606
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Position
11:complement(608313..935083)
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AA seq
766 aa
AA seq
DB search
MPSSSEVLTSVIGERTSDEWKDSHLLRMSSKPATSPFTCKADGEEEMTGELASRENDDND
EMHHLPHLPLHSLLHNKPHPEELSTLVTSMQTDVDWDSMMSQHRMDSDSNKLRSLYSFRT
TPTSPHKPDEGARDRQDLMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCM
EKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMISQLISLREQLLAAHDEQK
KLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINILQQQIQVRVPRANHRVYCSP
PTGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMSSTPQPPNSTGPL
SPTAVKSEKRGGSPITQVKDEGAQPLNLSARPKTAEPVKSPTSPTQNFFQPSKTSPVSLS
TRSGIPSPISGVLGRGSSLDILSSLNSPSLFGDQDTVMKAIQEARKMREQIQREQHQPHA
MDGKISLNNLGLNNCRSDKERTHYENMGPQMMGKQNEDGKMGPGVIDLTRPEDADGGSTV
VEARVYRDSRGRSTNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSM
SNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMR
QFFTVGQQPQIPISTAGAVVYPGAISMANTTPSPQMTSDCSSTSVSPEPSIPVIQSTFAM
KLDSGSLAGNDLLNGEDEIEMYDEYDEEPKSDYSSETEANEAVGAN
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagctctgaagtcctgacgagcgtcatcggggaacgcacttcggacgagtgg
aaggacagccacttactgaggatgtcgtccaagccggccacctctccattcacctgtaaa
gcggatggggaggaggagatgaccggagagctggcctccagggagaatgacgacaacgat
gaaatgcaccacctcccccacctgccgctgcactccctcctacacaacaaacctcacccc
gaggagctctccaccctcgtcacaagcatgcagaccgacgttgactgggacagtatgatg
tcacagcatagaatggactcagacagcaataaactgcgctccctctattccttccgaacc
acgcctacctcaccacacaagcctgacgaaggagcgcgcgatcgccaagatctgatgacc
agtgttaacttcgggacgccagagagacgcaaaggcagcctggccgacgtggtggacacc
ctgaaacagaagaaactggaggaaatgacgaggacggaacaagaggattcttcctgcatg
gagaaacttctttctaaagactggaaagagaaaatggaacgactaaacacaagtgaacta
ctaggggagattaaaggtaccccggaaagcctcgcggaaaaggaacgccagctctccacc
atgatctcccagctgatcagcctgcgggagcagctattggccgcccacgacgagcagaaa
aaactggccgcctcccagatagagaaacagagacaacaaatggacctcgcccggcaacaa
caggaacagatcgcacgacaacagcagcaacttctgcaacagcaacacaagatcaacatc
ttacagcaacagatccaggtaagggtcccgcgagccaatcacagagtctattgttctccc
ccgacaggtgataactaccccgtgcaattcattccatcgacaatggcagctgccgcagct
tctggactcagcccgttacagctacagcaactctacgccgctcagctcgccagcatgcag
gtctctcccggagccaagatgtcctccacgcctcagccccccaattccacgggacccctg
tcacccaccgccgtcaagagcgagaagagggggggcagccccatcacacaggtcaaggac
gagggcgcccaaccgctcaacttatcggcgcgaccgaagacggccgagcccgtgaagtcg
cccacgtctcccacgcagaacttcttccagcccagcaagaccagcccagtgagcctctcc
accaggagcgggattcccagcccgatcagcggagttctgggccggggctcctccttagat
atcctgtccagtctgaactctccgtcgctgtttggggaccaggatacggtcatgaaggcc
atacaagaggcacggaagatgagggagcagatccagcgggagcagcaccaaccccacgcc
atggacgggaagatctcgctcaacaatctgggtctcaacaactgccggagtgacaaggag
agaacacactatgaaaatatgggcccacagatgatggggaagcaaaatgaagacggaaaa
atgggacccggtgttattgacctgacgaggccagaagacgcagatgggggcagtacggtg
gtggaggcgcgagtgtacagagactctcgggggaggagtaccaacgagccgcacatcaag
cgaccaatgaacgctttcatggtttgggcgaaagacgagcgaaggaaaatcctgcaagcc
tttcccgacatgcacaactccaacatcagcaaaatcctgggttcccgctggaaatcgatg
tccaaccaagagaagcagccatactacgaagaacaagctcgcctcagcaagatccacctc
gagaagtatcccaactacaagtacaagccgcgacctaagcgcacgtgcatcgtggacggc
aagaagctacggattggagagtacaagcagctgatgaggtcgaggagacaggagatgagg
caattcttcactgtggggcaacagcctcagatccccattagcactgcgggagcggtggtg
tacccgggcgcgatcagcatggccaacaccacgccgtcaccccagatgacgtcagactgt
tccagcacttcggtcagccccgagcccagcatccccgtcatacagagcaccttcgccatg
aagctggacagcggcagcctcgccggcaacgacctgctgaacggcgaggacgagatagag
atgtacgacgaatacgacgaggagcccaaatcagactatagcagcgaaaccgaagccaat
gaggctgtgggtgccaactga
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