Rana temporaria (common frog): 120917577
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Entry
120917577 CDS
T07929
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03008
Ribosome biogenesis in eukaryotes
rtem03013
Nucleocytoplasmic transport
rtem03015
mRNA surveillance pathway
rtem05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120917577 (NXF1)
03015 mRNA surveillance pathway
120917577 (NXF1)
03008 Ribosome biogenesis in eukaryotes
120917577 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120917577 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120917577 (NXF1)
03009 Ribosome biogenesis [BR:
rtem03009
]
120917577 (NXF1)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120917577 (NXF1)
mRNA cycle factors
Stress granule specific factors
120917577 (NXF1)
Ribosome biogenesis [BR:
rtem03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
120917577 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
120917577
NCBI-ProteinID:
XP_040184914
LinkDB
All DBs
Position
11:120752259..120809664
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AA seq
633 aa
AA seq
DB search
MAEGGRSYIAPLMSENICLRFSDHDDRVGGSFFQKKRKGRGPFRGKMYSEAGPRNRNRGG
YPPNPRSRLDVEDGDVPMSDIPDPVRSRFNPYNRGGRRRDNRGAFHGNPARDNSHHARTD
VRNDRDSWFKITIPYGKKYEKDWLIGLLQSGCSLPFSPIGYHLDHSRAHFYVEDAAVAKA
LRQISRTFSDRENFKITIITQPSPPPPQLKDMQMTEEEIAHFKCCMQKRYDGAQQALDMS
SVRSDPDLVENKVDIILNRKSCVQSMLQIIEENVPELLSLDLSNNKLYRLEHMSEIHLKA
PNLKILNLSRNVLRTDKDLDRIKGLKLEMLWLDGNPLCDSFREQSLYISAMRERFPKLLR
LDGHELPPPITFDVETPTTLPPCKGSYLSTDNIKAIVLRFLQQYYAIYDGEDRQGLLNVY
HDEACCSLSIANVTGQNPARSSLGDYFANSRNLKRLREPRDLALRNKLLKHKRLNVVSFL
NELPRTQHDLNSFVVDVTTETNTLLCFVVNGVFKVEGQSNDPVRAFSRVFIAVPGNETAG
LLLVNDQQFIRNASTDEIRKAFATPAPTPSSSPVPVVAPVPQDMVLAFSQHSGMNLEWSQ
KCLVDNGWDWEQSVQIFMRLKAEGKIPEIAFIK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggtggccggagttatatcgcacctctgatgtcagaaaatatatgtttgagg
ttttcagaccatgatgaccgggttggtggaagctttttccaaaagaagcggaaagggcgt
ggcccatttcggggaaaaatgtatagtgaagcaggcccgagaaaccgaaatcgtggtggt
tacccacctaaccctcgttcccgactagatgtggaagatggagatgtgccaatgagtgat
atacctgacccagtccgttcgcggtttaatccttataaccgtggaggcaggagaagagac
aacaggggtgcttttcatggaaatcctgctagggataattcgcatcatgctagaactgat
gttagaaatgaccgagacagctggttcaagattacgattccatatggtaaaaaatatgag
aaggattggttgatcggccttttgcaaagtggctgttcgcttcctttttctcctataggg
taccatcttgaccattctcgggcccacttctatgtggaagatgcagctgttgcaaaagct
ctgagacagatctcaaggactttctctgacagagagaacttcaagattactataattaca
caaccatctccaccgcctcctcaattaaaagacatgcaaatgactgaagaggaaatcgca
cattttaagtgctgtatgcaaaagcgatatgatggtgcccagcaagccctagacatgagt
tcagtgcgttctgatccagatctggtggaaaacaaagtagacatcattctaaacaggaag
tcctgtgtgcagagtatgttgcagattattgaagagaatgtgcccgagcttttgtctttg
gatctcagtaacaacaaactctacagactggaacacatgtcagaaattcacttaaaagcc
ccgaatctgaagatcctgaatctttctcgtaatgtgctaagaacggataaggatctggat
aggattaaaggtctgaagctcgaaatgctgtggttagatggaaacccactttgcgacagt
ttccgagaacagagtttatatatcagtgctatgagagaacgctttccaaaactactgcga
ctggatggacacgaacttcctccaccaataacatttgatgtagaaacccccaccacactt
cctccatgtaagggcagctacctgtctacagataacattaaagcaatagttttgcgattt
cttcaacaatattatgccatctatgatggtgaagatcgacaaggcctgctaaatgtttat
catgatgaagcttgctgctctcttagcattgcaaatgtaaccggacagaaccctgccagg
agcagtctgggagattactttgctaacagcaggaatttaaagagactacgagaaccccga
gatctcgcacttcgtaataaacttctcaagcacaaacgtctcaatgttgttagcttcttg
aatgaacttccacggacgcagcatgatctgaactcctttgttgtggacgtcactactgag
actaacaccttactttgctttgtggttaatggagtgtttaaagttgaggggcaatccaat
gatcctgtgcgtgctttctctcgggtattcatagcagtgccaggaaatgaaacggcaggg
cttcttttggtaaatgatcaacaattcataaggaatgcaagtacagatgagatacgcaaa
gcctttgccacaccagctccaactccatcaagtagccctgtgcctgtggtagcccctgta
cctcaggacatggtgctggcattcagtcaacattctggcatgaatcttgagtggtctcag
aagtgtcttgtggacaatggatgggactgggaacagtctgtacagatttttatgaggcta
aaggccgagggaaagattccagaaatcgcctttatcaagtga
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