Rana temporaria (common frog): 120918520
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Entry
120918520 CDS
T07929
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120918520 (TNRC6C)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120918520 (TNRC6C)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120918520 (TNRC6C)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120918520 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
RRM_1
UBA_7
UBA
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
120918520
NCBI-ProteinID:
XP_040186068
LinkDB
All DBs
Position
12:complement(109341933..109488437)
Genome browser
AA seq
1895 aa
AA seq
DB search
MEEKKKKKQEEKKKKENTQKKAAEQKNKVPDPVKISSNQPQTATPSTSTSTVPNSNGKRA
SANGQQTAASRYLPREVPPRFRQQEQKQLLKRGQPLPSGTLTSANTGQDTGQTGTSPPPQ
QGAGGAHHPTKTHSDLGFSGLGDHYENSYWGPQPTIRGETSYSWDKVIIDRTDKEAWPSI
TGTETESASECTTDTDSASNCGSEKSSMATTSAQGTFTGHTKKSNGNNGTNGALVQSTSN
QSALGAGGANGNGNLSRVWGAPSGSNSGTAHCSSSSGDGKVDSMIGESRSQNCWGASNTN
SGINLNPNANPSAWPVLGHEGTLNGGNPSNICCPASAIGQNIGNQNGNAAGTLGAWRSLQ
SQESTEPQTSTSQNVSFSIQPQNLNTDGPNNTNPMNSSPNPINAMQANGLPNWGMAVGMG
SIIPPHLQSLPGANGSVSQVSGVGEGMGSSVWGLSPGGPAPGNSSSGFSHETGDTNTAVS
AKQNGGQKDGTVANAWDSGPPTSPGVLAWGRGRGNGGNMHSGPWGQPSRGTNGMNGEWGK
SQNQHSSNDISGKGSTGWDSSSITIQNSPQQGSDQMNSRAKSVSSNDRGNDNAGNPNEGR
GGESQRGDKGIADQGQMQLPRQDLDPRVLSNTGWGQVPVKQNIAWEFDEFQRPERKNIGT
EAWGSTNTQPSNSGGKSEGSIMNSTNTSTVSGWVNPSQPLSAPVNAGWVESKAPNGPGGW
GDPASSTVVNAAAKSGHAWSGSANQEEKSPTWSESHKSKPQGWVEGQKPNNGWTAGGGDW
NDMPPVPAHITEGKKNGTGWDTDGKSATGWNDNTRPGTSGWGNGTSTKPNSGTGWGEPLK
SPQQNWASKPQDVSGWGGAASVKQTGSGWGGGGGGQVPAPPPAKQKDMNSDSSGWQEPSP
PSIRRKMEIDDGTSAWGDPNKYSSKTVNLWDRNSTVVPTIPSANSNTTPITPSNASLVEP
QPPHQSSAQQNRSPLIGPGWGDMPPVHSKAENPWGEPPSPSVSVDNGTSAWGKPTNSGSG
WVDGAAESSGNYGRTNAPAAAPSLCKPAQKSMQEGWSSGGEDVGLSQWDDEESDMWNNAA
SQDSNSCNSWGNGPKKGLSKQGMKTPSKSDEAWIITRLTKQLTDMGFPKEPAEEALKSNN
LNLDQAMSALLEKKVELDKRGLGMADYNAVVAKPLSCRPPPISKESSMDRPTFLDKDGGL
VEEPTTSPFLPSPSLKLPHPNSALPNQALGGMTPGLNMQNLNSSRQMQSGNLGMFGNSGA
AQARSMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPIN
PQHMTMLNQLYQLQLAYQRLQLQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQR
QLAQALLLKQQTAPQHPPMHPSAGKSALDSFSPHNPGPSLADLHTKEQQSSNTYSPYPIG
NPCSWISGRYPPERSLSPAPGGQYPADDRHFSASGPGINHAMNVSSMDMAGGLSVKDTSQ
SQSRLPQWTHPNSMESLANSASLDHSPGKSNAHPGGLGIGPPAKPNMDDSYNRYDLLQNS
DSPTSPPVPDSWSRAKTENDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVP
TGPTINTTIQDVNRYLLKSGAKLSDIKSNWSSSPISHTQASLSHELWKVPRNTTAPTRPP
PGLTNAKPSSAWGSNQLGWTSSYSTGSTWSTDSSGRTSSWLVLRNLTPQIDGSTLRTLCL
QHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQ
GQSMPPTSSWQSNTGNSQPRMGGNGGSHTMVRNDAAHWNPSCLSAKGGNDLLWGGVPQYS
SSLWGPPGSDDARMIRSPTPLNTLLPGDLLSGESM
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaagaagaaaagaagaagaaggaaaatactcagaaa
aaggctgctgaacaaaaaaacaaagtgccagatccagtcaagatcagttccaaccagccc
caaactgccacgcccagtacttccaccagcactgtcccaaatagcaatggcaagcgtgca
tctgccaatggccagcaaacagcggcctcccgttatctgccacgtgaggtgcctccacgt
ttccgccagcaagaacagaagcaacttctgaaaagaggacaaccactgccttctgggaca
ttgaccagtgctaatacaggacaggatactgggcaaactgggacaagcccacctccacag
caaggggctggtggagctcaccaccccacaaagacgcactctgatcttggttttagtggt
ctcggcgaccattatgaaaattcttattgggggccgcagcctactatcagaggtgaaacc
agttatagctgggataaagtgataatagacaggactgacaaggaagcgtggccttccatt
acgggaactgagactgaatctgcctcagaatgtactacagacactgattccgcctccaac
tgtggctcagagaaaagtagcatggctacaacgagtgcccaaggcacgttcactggacat
acaaagaaatcgaatggcaataatggcaccaatggagcactcgtccaaagcacttctaac
cagagtgcccttggagctggaggagcaaatgggaatggaaacttatccagagtttggggt
gcaccttcaggctccaactctggcactgctcactgctcctccagtagtggtgatggaaag
gtggacagtatgattggagagagtaggagtcagaactgctggggtgcttccaacacaaat
tctggcattaatcttaaccctaatgccaacccatctgcctggcctgtccttggacatgaa
ggaactttgaatggaggtaatccttccaacatttgctgtccagcgagtgccataggccag
aatatcggcaaccagaatggaaatgctgcaggtaccttgggtgcttggagaagtttgcag
tcacaagagagcacagaaccacaaacgtccacttctcagaatgtgtctttcagcatacaa
cctcagaaccttaacactgatggaccaaataacactaaccccatgaattcttcaccaaac
cccattaatgcaatgcaggcaaatggactgcccaactggggaatggctgttggaatgggg
agcatcatcccgccccacctgcaaagccttcctggtgctaatggttcagtttctcaagtc
agtggggttggtgagggcatgggcagttcagtgtggggtttatcacctggtggccctgct
cctggaaacagcagttctgggttcagtcacgaaactggagatactaatacagctgtaagt
gctaaacaaaatggaggacaaaaagatggaactgtagcgaatgcatgggattcaggacca
cctaccagtccaggggtcttagcttggggtaggggtagaggtaatggtggaaatatgcat
tctggaccttggggtcagccgagtcgtggcacaaacggcatgaatggtgaatggggaaag
tctcaaaaccagcattccagtaatgacatcagtggaaaagggtcaacagggtgggacagt
tctagtattaccattcagaattctccacagcagggaagtgatcaaatgaattctagggcc
aaatctgtatcatctaatgacagaggtaatgacaatgctggaaatccaaatgaaggaaga
ggtggagaaagtcagcgtggggacaagggaatagcagatcaggggcagatgcaattgcca
agacaagaccttgatccaagggtcctctccaacacaggttggggacaggttccagttaaa
caaaatatagcatgggaatttgatgaatttcagaggcctgaaagaaaaaatattggaacg
gaagcttggggatctacaaacacgcagccttcaaactcaggggggaagagtgaagggtcc
atcatgaacagtacaaatacctctacagtatcaggatgggtcaacccctcccaaccttta
tctgctcctgttaatgcaggctgggtggaaagcaaagcgccaaatggtccaggggggtgg
ggagatcctgcaagctctactgttgtcaatgctgctgccaaaagtggtcacgcttggagc
gggtctgctaatcaggaggagaaatctcctacatggagtgagtctcataaatccaaaccc
caaggctgggtagaaggacagaaaccgaataatggctggacagcaggtggtggagactgg
aatgatatgccacccgttccagcacatattactgaaggaaagaaaaatggaactgggtgg
gacacagatggaaagtctgcaacagggtggaatgataatacacggcctgggaccagtggg
tggggcaatggcacaagcaccaagcccaattcgggtacaggttggggggaacctttgaaa
tctcctcagcagaactgggccagcaaaccccaggatgtgagtggttggggaggagctgca
tctgtaaaacagactggatcggggtggggtggaggaggtgggggacaagtgccagcaccg
ccgccagctaaacagaaagacatgaactctgactccagtggttggcaagaaccttcacca
ccgtccatacgccgaaaaatggaaattgatgatggtacctcagcttggggagacccaaac
aaatacagcagtaaaactgtaaacttgtgggataggaacagcacagtagttccaactatt
ccttcagctaatagcaacaccaccccaattactccctcaaatgccagtttggttgaacct
cagccacctcatcagtcaagtgcccagcagaatcggtccccactaattggtccaggctgg
ggagatatgcctcctgtccactctaaggccgaaaacccttggggggagcccccatctccg
tctgtttcagttgacaatggcacttctgcatggggaaagcccaccaatagtggttcagga
tgggtggacggtgctgcagaatcgtctggaaattatggcaggacaaatgctccagctgct
gccccttcgctgtgcaaaccagctcaaaaatctatgcaagaaggctggagtagtggagga
gaagacgttggcctcagccagtgggatgatgaagaaagtgatatgtggaataatgctgct
tcccaagatagtaattcttgcaattcttggggcaatggccccaagaaaggactttccaag
cagggcatgaagactccaagcaagtctgatgaggcctggatcataactcgactgactaaa
cagctcactgacatgggcttcccgaaagagcctgctgaagaggccttgaaaagtaacaat
ttgaatctggaccaggccatgagtgctctactggaaaagaaggtggaattggacaagcgt
ggattgggaatggcggactacaatgcagttgtcgccaagcccttgagctgccgcccacca
ccgatctccaaagagtcttccatggaccgccccactttcttagacaaggatggcggccta
gtggaagagcccactacttcaccatttttgccttcaccaagcctgaagctcccccatccc
aacagtgcactccctaatcaagcccttggtggcatgacaccaggcctaaacatgcagaac
ttgaattcctctagacagatgcagagtggcaatctgggtatgtttggcaatagtggagca
gcacaagccaggtccatgcaacagccacagcagccaccagtgcaacctctcaactcatcc
cagcctagtcttcgtgctcaagtgcctcagtttttatcccctcaggttcaagcacagctt
ttgcaatttgcagcaaaaaacattggtctcaaccctgcactattaacctcgccaattaat
cctcagcatatgaccatgttgaaccagctctatcagctgcagttggcgtatcagcgttta
caactccagcagcagatgttacaggctcagcgtaatgtttccggacccatgaggcaacag
gagcagcaagttgcacgtacaatcaataacatgcagcagcagatacagcaacatcagcgc
cagctggcccaggctctgcttttgaagcaacagactgcccctcaacatccaccaatgcat
ccttctgcaggcaagtcagctctggacagcttctcaccccataacccaggtccaagcctg
gctgacctgcacaccaaagaacagcagtcttcaaatacttactctccttacccaattggg
aatccatgttcttggatatctggacgatatcctcctgaaagatcactcagtccagcccct
ggtggccaatatccagcggatgatagacacttcagcgcttcaggtcctggaataaatcat
gctatgaatgtaagcagcatggacatggctgggggtttgtcagtgaaggatacatcccag
tctcagtctcgtctgccacagtggacccatcccaactccatggaaagcctggcaaattct
gcttctcttgatcacagtcctggcaagtcaaatgctcatcctggaggtcttggcattggc
cctcctgcaaagcccaatatggatgactcctacaatcggtacgatcttctccaaaacagt
gactcgccaacaagtcctcccgttcccgacagctggtcacgtgccaaaactgagaacgac
aaaatctccaatggatccagtatcaactggcctcctgagtttcacccaggagtgccttgg
aaaggactgcaaaacattgaccccgagaatgatcctgatgtgaccccaggaagtgttcct
actgggcctaccattaataccacaatccaggatgtcaatcgttatctgctcaaaagtgga
gctaaactgtctgatataaagtccaattggtcatccagccctatctcccacactcaagca
tcgttgtctcacgagttgtggaaggtaccaagaaacactacagccccaaccaggccacca
cctgggctaaccaatgccaaaccctcctctgcctggggctcaaatcagctgggctggact
agctcctattcaacaggttccacctggagcacagacagttcaggaagaacaagtagctgg
ctggtcctgcgtaacctcactccacagattgatggctccaccttgagaacgctgtgtctt
cagcatggtccgctgataacattccatctgaaccttactcaaggcaatgcggtggttagg
tacagctcaaaggaggaggctgccaaggcacagaagtctctacatatgtgtgtcctgggt
aacactactattctggcagaattcgctggcgaagaagaagtaaaccgtttcttggcacaa
gggcagtctatgccccccacttccagttggcagtctaacactgggaatagtcagcctcgg
atgggtggcaacggaggctcacacaccatggttcgcaatgatgctgctcactggaatcct
tcttgtttgagtgccaagggaggcaatgatcttctgtggggaggcgtcccacagtattcc
agcagcttgtggggcccacctggatcagatgatgccagaatgattcgcagtccaacacct
ctcaatactctgttaccaggagatttgctgagcggggaatccatgtga
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integrated database retrieval system
