Rana temporaria (common frog): 120919090
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Entry
120919090 CDS
T07929
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120919090 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120919090 (DDX5)
03009 Ribosome biogenesis [BR:
rtem03009
]
120919090 (DDX5)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120919090 (DDX5)
Spliceosome [BR:
rtem03041
]
Complex A
U1 snRNP components
U1 related factors
120919090 (DDX5)
Complex B
120919090 (DDX5)
Ribosome biogenesis [BR:
rtem03009
]
Eukaryotic type
Pre-60S particles
Helicases
120919090 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
120919090
NCBI-ProteinID:
XP_040187022
LinkDB
All DBs
Position
12:2911917..2925040
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AA seq
601 aa
AA seq
DB search
MPGFNDRGRGFGGAPRFGGNRNGGSSGKYGNPGERLIKKKWNLETLPKFEKNFYQEHPDL
VRRTPQEIQEFRRSKEITVRGLLCPKPIFSFHEASFPDNLMGVIRHQNFTDPTPIQSQGW
PVALSGLDMVGVAMTGSGKTLSYLLPGIVHINHQPFLQRGDGPILLVLAPTRELAQQVQQ
VAAEYGRACRLRSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKTNLDRCTYL
VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPREVRQLAEDFLKDYVHINIGAL
ELSANHNILQIVDVCNDGEKDDKLVRLMEEIMSEKENKTIVFVETKRRCDDLTRRLRRDG
WPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDY
IHRIGRTARSTNTGTAYTFFTPNNAKQVNDLISVLREANQTINPKLLSMFEDRGGRFRGR
GGFNDRRDRFSSGKRGGWDRDNRGFGAKRDFGNKPQNGFGGGSYGNSNSYSNGYGMQGNQ
GGYRGGAQNGSYQSYNAGQQYTAPVPNGGIAQQAYTAYPIAAAPTTTPALIGYPVPAAYT
Q
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgccgggattcaacgaccgaggccgcggatttggaggagcacccagattcggaggaaac
agaaatggtgggtcatctggaaagtatggaaatccgggtgagcggctcatcaagaagaaa
tggaatttggagacattaccaaaatttgagaagaacttctaccaagagcaccccgactta
gttcggcgcacaccgcaagaaattcaagaattcagaagaagcaaagagatcaccgtcaga
ggcctcctctgccccaagcctatattttctttccatgaagcaagcttccctgataacctc
atgggagtgattaggcaccagaatttcactgaccccacacctatccagagccagggctgg
ccggttgccctgagtggactggacatggttggcgtcgccatgactggatctggaaaaaca
ctttcgtacctacttcctggaatcgtccacatcaatcaccaaccattcctacagagagga
gatgggccaattctcctggtgctggcaccgacccgagagctggcacaacaagtgcagcaa
gtagcagcagagtatggcagggcttgccgtttaaggtctacctgtatttatggaggagca
cccaaaggaccacagctccgtgacttagaaagaggtgttgaaatttgcattgcgacaccg
ggccgactgatcgacttcctggaggccgggaagaccaacctggacagatgtacatacctg
gtactcgatgaagcagacagaatgctggatatgggttttgagccccagatcaggaagatt
gtggatcagatcagacctgacagacagacccttatgtggagtgccacctggcccagagaa
gtcaggcagcttgcagaagacttcttaaaggactacgtgcacattaatatcggtgccctg
gagctgagtgccaaccacaacattctgcagattgtagatgtctgcaacgatggagaaaag
gatgacaagcttgtccgtctgatggaggaaatcatgagtgaaaaggaaaataaaaccatt
gtgttcgtagagacaaagaggcgatgtgatgacctcacaaggagattacgcagagatggg
tggcccgcaatggggatacatggtgacaaaagccagcaggagagagactgggtattaaat
gagttcaagcatggcaagtcaccaatcctcattgccacagacgtggcgtcccgcggtcta
gatgtggaagacgttaaatttgtcatcaactacgactatccaaactcctccgaggattac
atccaccgtatcggccgtacggcccgcagcaccaacacaggcaccgcctacaccttcttc
acgcccaacaacgccaaacaagtcaacgacttgatctccgtgctgagggaggccaaccag
acaatcaatcccaagcttctctcaatgtttgaagacagaggaggacgcttcagaggccgc
ggaggatttaacgaccgtcgtgacaggttctcttcaggcaagcggggcgggtgggaccgg
gataacagagggtttggtgctaagagagactttggaaacaagccccagaacggatttggt
gggggttcatacggaaacagtaactcctacagcaacggctacggaatgcaaggcaaccaa
ggagggtatcggggaggcgcacagaacggctcctaccagagctacaatgccggacaacaa
tacaccgcacccgtacctaacggcgggatcgcacaacaagcatacacagcctacccaatc
gccgctgcccccacaacaactcctgccctgataggttatcctgtgccggcagcctacaca
caataa
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