Rana temporaria (common frog): 120919245
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Entry
120919245 CDS
T07929
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120919245 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120919245 (DDX42)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120919245 (DDX42)
Spliceosome [BR:
rtem03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120919245 (DDX42)
Complex B
120919245 (DDX42)
Complex C
U2 SnRNP specific factors
120919245 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120919245
NCBI-ProteinID:
XP_040187243
LinkDB
All DBs
Position
12:complement(25774552..25799749)
Genome browser
AA seq
975 aa
AA seq
DB search
MSMNWNKGGPSGKRGFGFGGFAINTGKKEEPKLPQTAHSAFHGPPPGNSSQLPSFYKIGS
KRANFDEENAYFDDEEEDSSNMDLPYIPAENSPTRQQMLAKKEESDSEDDPLEAFMAEVE
DQAARDLRRLEERDKEKKNARGIRDDIEEEDDQEAYFRYMAENPTAGLIPEEEEDNLEYD
SDGNPMAGTTKRVIDPLPPMDHSEIEYSPFEKNFFEEHEEITALTPQQVVDLRNKLNLRV
SGAAPPRPASSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGIPVALSGRDLIGIAKTGSGK
TAAFIWPVLVHIMDQKELQPGDGPIAVIVCPTRELCQQIHNECKRFGKAYNLRSVAVYGG
GSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRS
VANHVRPDRQTLLFSATFRKKIERLARDILIDPIRIVQGDIGEANEDITQMVEILPSGPE
KWSWMSRRLVEFTSTGSVLVFVTKKANAEELASNLRLEDHSLGLLHGDMDQSERNKVITD
FKKKAIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGAAYTLLT
PKDTNFAGDLVRNLEGANQYVSKELLDLAMQNAWFRKSRFKTGIGKKLNVGGGGLGYRER
PGLGADTSERNVSGNVMSNYEAFKPTGGAMGDRLSAMKSAFQSQYKNHFIAASLNTQKTG
TSTVNSGAWTSAGSLSSVPSTPSHSLVLSEESAPPPPRSMPGFTSSGTLSSIPSTYAPVI
APSYPAPSQYSAKDSSSGGREGSGNRGERDRYSDGKGRHGQGHRHSDREGHRHGDGHRHS
SGGRHGDGRNGDGRREGSREADGRREGSREADGRREGSREADGRREGSREADGRREGSRE
ADGRREGSRDRDSSRRDSRGESRKEGSARDGKREGSQDSDSPRESKDEGESRKESKSESF
AVPDLPKRKKSRWDS
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgaactggaacaaaggggggccgagcggcaagcgcggctttggattcggaggc
ttcgctatcaatacggggaagaaggaggagccgaaactgccgcagacggctcacagcgct
ttccacgggccacctcccggcaacagttcccagctgccctccttctacaagattggatcc
aagagggccaactttgacgaggaaaatgcatactttgatgatgaagaggaagattcctcc
aatatggacctgccatacattccagcagagaactccccaaccagacagcagatgctggcg
aagaaggaagaatctgacagtgaggatgatccgcttgaggccttcatggcagaagtggag
gatcaggctgcccgagacttgaggaggctggaggaacgggacaaggagaagaaaaacgcc
aggggtatcagggatgacattgaggaagaagatgaccaggaagcgtacttcaggtacatg
gctgagaacccaaccgccgggcttatccctgaggaagaggaggacaaccttgagtacgat
agtgatggaaaccccatggccggcaccaccaagcgtgtcattgatcctcttccccctatg
gatcattccgagatagagtattcaccgtttgagaagaatttctttgaagaacacgaggag
atcacggctctgaccccccagcaggttgtagacctgaggaacaagttgaacttgcgggtc
tctggagccgctccgccacgtccagccagcagctttgctcactttggatttgatgaacag
ctcatgcaccagattaggaagtctgaatacacccaacccacacccatccagtgccagggt
attccagtggcacttagcggacgtgacctgattggcattgccaaaactgggagtggtaag
acagctgcgttcatctggcctgtgctggtacacattatggaccagaaggagctccagcca
ggggatggccccattgcagtcattgtgtgtcccacacgcgagttgtgccagcagattcac
aatgaatgtaaacgatttggaaaggcctataacctgcgttctgtggctgtgtacggaggt
ggcagcatgtgggaacaggccaaggctctgcaggaaggagcagagattgtggtctgcact
ccgggccgtcttattgaccacgtgaagaaaaaagccaccaacctgcaacgtgtcacttac
cttgtgtttgatgaagcggatcgaatgtttgacatgggttttgaataccaggtccgatcc
gtcgccaaccatgtgagaccagacagacaaactctcctgtttagtgccactttccggaaa
aagattgaaagattagccagagatattctgattgatcccatccgcattgttcagggagat
atcggagaggccaatgaagacatcactcagatggttgagattctcccatccggcccagag
aagtggagctggatgagccgcagactggtagagttcacatctacaggcagcgtccttgtt
ttcgtcaccaagaaagccaacgctgaagagctggccagcaacctacgcttggaggaccat
tctttgggccttcttcatggagatatggaccagagtgagaggaacaaagtcatcacagac
ttcaaaaagaaggccatccccgttctggtagctacagatgttgctgcccgaggcttggac
attccatcaatcaagaccgtgatcaactatgacgtggcgcgagatattgacacacacact
caccgtattggtcgtacgggcagagcgggagagaagggtgccgcttatactctgttgacg
ccaaaagacaccaattttgctggggacttggtgaggaatctggaaggagcaaaccagtat
gtgtctaaggagcttctggacctggctatgcagaatgcttggtttcgcaagtcccgcttt
aagactggaataggcaagaagctaaacgttggtggaggaggcctgggctatagagagcgc
ccaggacttggagcagacacttcggaacgcaacgtgtctgggaatgtgatgagcaactac
gaagccttcaaacccacaggcggggcgatgggagacagattgtcggccatgaagtctgct
tttcagtctcagtacaaaaatcactttattgctgctagtctcaacacacagaaaacgggg
acatctacagtcaactctggtgcatggacaagtgctggtagtttaagttccgtacccagc
accccatcacacagtttagtactctcagaggagtcggctccaccccctcccagatccatg
cctggttttaccagcagtggaacactaagcagtattcccagtacttatgctcctgtgatt
gctcccagttatcctgcccccagccaatacagtgccaaagacagcagcagtggcggcaga
gagggaagcgggaaccgaggagagagagataggtacagcgatggaaaagggagacacggt
caaggacatcgccatagcgacagagagggccaccgccatggcgatggacaccggcattcc
agcggcgggagacacggggatggtcgtaatggagatggcagaagggaaggctcacgagag
gccgatggacggagggaaggctcacgagaggccgatggacggagggaaggctcacgagag
gccgatggacggagggaaggctcacgagaggccgatggacggagggaaggctcacgagag
gccgatggacggagggaaggctcccgcgacagggacagcagccgaagagacagtcgtgga
gaaagtcgaaaagaaggaagcgctcgtgacggcaagagagagggctcccaggacagcgac
agtcccagggaatcgaaggatgagggcgaaagtcgaaaagaatcgaaaagtgaaagtttt
gcagttccagatcttccaaaacggaaaaagagcagatgggacagttaa
DBGET
integrated database retrieval system
