Rana temporaria (common frog): 120919336
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Entry
120919336 CDS
T07929
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04510
Focal adhesion
rtem04512
ECM-receptor interaction
rtem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120919336 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120919336 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120919336 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rtem00535
]
120919336 (COL9A3)
Proteoglycans [BR:
rtem00535
]
Extracellular matrix (ECM) proteoglycans
Others
120919336 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120919336
NCBI-ProteinID:
XP_040187384
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Position
12:complement(17609274..17670665)
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AA seq
676 aa
AA seq
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MVWFPALGFLLLVHLVAPQAPRAGPSGPPGPPGPPGIPGKDGIDGELGPAGIPGPAGPKG
APGKPGEAGKAGLPGLPGIDGLTGSDGKAGPDGPPGGRGDIGPPGPDGPSGRGPPGPPGL
AGPSGLPGGKGPQGPAGPAGQPGLPGPPGPPGPPGLPGVVPDSNGDLQCPAVCPPGPPGP
PGMPGFKGHTGHKGERGESGKDGQKGDPGPPGPAGIPGSVGLQGPRGPRGSVGLQGGAGD
RGDTGFRGPSGPPGPPGKAGDQGVRGPQGYLGPKGDTGKSGPKGMPGGPGPLGEPGMPGK
DGRDGTNGLDGEKGDRGRIGVPGEKGPNGLPGLGGKAGTKGEKGQLGSGGEQGESGPSGE
PGIPGEAGPPGERGEAGPRGGAGGLGLQGPIGVSGVRGFQGPKGNIGDPGLPGPTGIRGG
FGERGPVGASGPKGSEGIAGSDGLPGEKGEMGPFGPVGQKGEPGVRGEPGPKGISGPNGT
SGVLGVPGPPGAMGLQGEQGVPGLTGKTGVPGKLASEQHIRELCGGMISDQIAQLAANLR
RPLAPGAVGRPGSPGPPGPQGVIGQVGHTGNRGPPGYRGPPGELGDSGPRGNLGDKGDKG
PVGRGIDGPPGDQGEQGAQGALGVSVDGRDGSHGEAGYPGEPGRPGAVGAHGTPGICDTS
ACQGAMAAEKSGSRKS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggtttggttcccagctcttgggttccttttattggtccacttggtggcaccccaagcg
ccgagagcgggaccttcgggaccacctggcccacctggacctcctggaataccgggcaag
gatggaatagatggtgaactcggacccgctggtatacctggacctgcaggccccaaagga
gcccctggaaaaccaggagaagctggaaaagctggcctgcctggccttccgggaattgac
ggcctgactggatctgatgggaaagctggacctgatggacctccaggaggaaggggagat
attggaccacctgggcctgatggaccttcaggaagaggaccaccaggacctcctggtctg
gctggaccgagcggcttaccaggcggtaaaggaccccagggaccagcgggacctgcaggt
caacctggccttccaggcccaccaggaccaccaggccctccgggtcttcccggagttgtt
cccgacagcaatggagatttgcagtgtccagctgtttgcccacctggcccacccggtcct
cctggcatgccagggtttaagggtcacacggggcacaaaggagagagaggggagtctgga
aaggacggacagaagggagatccaggaccaccgggaccagcaggaatcccaggcagtgtg
ggcttacagggcccaagaggtccaaggggctcagtcggactccaaggaggagcaggagac
aggggagacaccggattcaggggaccttccggtcctccaggacctcctgggaaagctggg
gatcaaggtgtgaggggtccccagggatacctaggaccaaagggagacacgggcaaatca
ggtccaaaaggaatgccaggaggtccgggcccgttaggagaaccgggaatgcccggaaag
gatggacgggatgggaccaatggtctggacggcgagaagggtgaccggggacggatagga
gttcctggagagaagggacccaatgggctacctgggcttggtggtaaagctggaacaaag
ggagaaaaaggccaactgggcagcggcggagagcagggagaaagtggaccttctggagag
ccaggtattcccggtgaagccggccccccaggagagagaggagaagccggccccagagga
ggagctggtggccttggactacaaggacccattggagtttctggagtaagaggcttccag
ggaccaaaaggcaacattggtgaccctggtttaccaggacctaccggcatccgtggtgga
tttggtgagcggggtcctgtaggagcttcaggccccaagggtagcgagggtattgctggc
tctgatggacttccaggagagaagggagagatgggaccatttggaccagttggacagaaa
ggagagccaggagtgagaggtgaaccaggtcctaaaggtatctctggacccaatggtaca
tctggagtactaggcgttcccggtccaccaggagcaatggggcttcaaggagaacaaggt
gttccaggattaaccggcaaaactggagtcccaggaaagctggcaagtgagcagcacatc
cgggagttgtgtggtggaatgataagtgatcaaattgcacagctagctgctaatcttaga
aggcctttggctccaggggcagttggtagaccaggttctcctggaccacctggacctcaa
ggtgtcattggacaagttggacatactggtaatcgtggacctccaggatatagagggcca
cctggagaactgggtgattctggtcccagaggtaacctgggtgacaaaggagacaaggga
cctgttggaagaggcatcgatggtccacctggagatcaaggagaacaaggtgcccaagga
gctcttggtgtaagtgtagatggtcgggatggttcccacggtgaggctggttaccctgga
gagcctggaagacctggtgctgtaggagcccacggtacccctggaatatgcgacacctcc
gcttgtcaaggtgccatggctgcagaaaaatcaggttccagaaagtcataa
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