Rana temporaria (common frog): 120919452
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Entry
120919452 CDS
T07929
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
rtem
Rana temporaria (common frog)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Interfer-bind
FN3_Tor_3rd
Motif
Other DBs
NCBI-GeneID:
120919452
NCBI-ProteinID:
XP_040187557
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All DBs
Position
12:complement(16700496..16843445)
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AA seq
1360 aa
AA seq
DB search
MQLPFPALLLCALIIIQTVSCHQNPGSGRLRLAVLMEDRLQMKWKEAEGTSNVYKVLVKP
LTGDPEQEVMLKTKTAKATVGGLDPVKEYVLQIHVIQGGQDTLIAKKKFIIEDLKAQVRN
EKKKADVTPAPQITESSSPAEGSTTTTERREDKEQLDTPSSRPQGPEGRRPGPQNATLVA
KPTQKISSKSEREVSATPSTPRRGPVHHCDTTLEWDIVLLVDSSWSVGRANFRLVKNFLW
GILSPLHISKDKIRVGLSQYSGEPQTEWDLNSYSTKTEVLEAIRRVKYKGGNTFTGMALT
HVLEENLRAASGARAQAGKVLVLLTDGKSQDDAITVAQTLKEAGIYMFAIGVKNADESEL
REMASKPTDLTVHMVADFPMLGPLVGDVSRALCMRLKDRRKEVDIGLQKVVAPVIVDPHP
SPTHLVVSDVTARSMRVSWTPPQQPVRKYRIVYYPSRGGTPQEVVLEGDSTSAILKNLTA
RTDYLVSVFPIYISGVGSGLRGITSTLPLSSPRELFVDQVTNSSFEVHWQPSDGASYYIL
TYSMKAGHGDEVKEIKSGDTKVLISGLSPNTNYSVTVVAAAGEETSDPITIQQITEPTRH
SLRFTNITHSSVTVYWEVAPPTGTIQHISYTSDASNVIAKEVEIPGGSSSVTLKSLTSQT
PYNVTLATSHSGLKTSLHLSGNFTTLKVPPPTGVKVVDMSGDSAAVAWDPGAEDVTSYLI
KWIPLSGGRPSQLSVPGDEHSAVLTDLEYSTEYQVSISARYADGSQSDASSARYRTGDNP
RKMPIGRGGFGPNRTDGTCPLMKAKDGEDVFHGYDMMAVFGLYDKLYSSISGVSIDAFVL
GRSRIYTMAENAQLTVWTREAHPHGLPQEHGLSFLLRLPANAAREPFTLWQLTDEDFQPI
VGIIADPNHQSLTYFNPDYEGNLQEVTFDEEEVKKIFYGSFHKLQVAVSKTNVRLYVDCQ
LVTEKVIKPMGKVTTLGFEMLGKLTRTRGPRSGSSALQLQSFLMVCGSEIPIGDGCCDVL
AKRDEKTCPALASACTCTSDVPGPSGPPGLPGPPGPRGSKGEQGEPGPVGDQGVSGQVGP
EGGGGHTGSPGIRGMAVTGPMGPPGMKGEKGDIGGQGLQGLLGPEGKAGKDGTMGPKGVR
GLEGNTGPSGPPGPRGIQGVQGLIGSPGERGPVGDVGPTGLPGTRGEKGEKGEPQSAATI
YHLVNQVCERLIQAHLVKLEAVLHEKDVQPVPLWDLELKPGEPGPPGLPGLPGEQGEPGF
NGAFGLPARNGYPGERGSKGHQGEKGAPGQSKEGTVGPPGALGLPGKDVFGNPGPMGFPG
QPGPPGNPGIPGHYGPPGVVGGCDSSSCYVSGAEELNVIP
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgccgttccccgctctgctcctgtgcgctctgatcatcatccagactgtcagc
tgtcaccagaatccaggctctgggcggttaaggctcgctgttctgatggaggacagatta
cagatgaagtggaaggaggcggaagggaccagcaacgtctacaaggtgctagtgaaaccg
ctgacgggggatccagaacaggaggtgatgctgaaaacgaagacggccaaggctacggtt
ggaggtctggaccccgtaaaggagtacgttctgcagatacacgtcatccaaggagggcag
gacaccctcatagccaagaagaagttcatcattgaagatttaaaggcccaagtgcgaaat
gagaagaaaaaggcagatgtgactccagcaccgcagatcacggagtcttcctctccagca
gagggcagcaccacaaccacagagaggagagaggacaaggagcagttggataccccaagc
tccagaccacaggggcccgaaggacgaaggccggggccccagaacgctaccctggtggcc
aaacccacccagaaaatttcctccaagtcggagagagaggtgtcagcgacccccagcacc
cctcggagagggccggtacaccattgtgacaccacgctggaatgggacatagttcttctg
gtggacagttcctggagcgtaggacgcgccaactttagactggtgaagaacttcctgtgg
gggattcttagccccctccacatctccaaggacaagattcgagtcggtctgtctcagtac
agcggagagccacagactgaatgggatctgaactcgtattccactaaaacagaggtcctg
gaggccattagaagggtgaagtataagggaggaaacacctttacaggtatggctctcacc
catgtcctggaagaaaatctcagagccgcatcaggagcccgggcccaggctggcaaagta
ctggtcctcttaacggatgggaagtcccaggatgatgccatcacagtggcacagaccctt
aaggaggccggaatatacatgtttgctataggggtgaagaacgcagacgaatcggagctg
agagaaatggcatccaagccgaccgacctgaccgtccacatggtagccgacttcccgatg
ctcggccctctggtgggagacgtgtcccgggcgctgtgcatgcggctgaaggatagacgg
aaggaggtagacatcggattgcagaaagtagtggcccccgtcatcgtggacccgcacccc
agccccactcacttggtggtatccgatgtaacggcaaggagcatgcgcgtgtcctggacc
cctccgcagcagcccgtccgcaaataccgtatagtctactatccatctcgcggtgggaca
ccccaagaggtggtcttggaaggagattccacctctgccatccttaagaacctaaccgcc
cgcaccgactacctggtctcggtcttccccatctacatcagtggcgtgggctctggactc
cgtggaatcacctcaaccttgccactgtcttctccccgtgagctcttcgtagaccaagtc
accaattcatcctttgaggtccactggcagccatcggacggcgcctcttactatattttg
acctactcaatgaaggctggccatggggacgaggtgaaagagattaaatcaggagacaca
aaggtcctcatctctggcttgtccccaaataccaattacagtgtgactgtggtagcggca
gctggagaagagaccagtgatcccatcaccattcagcagataaccgagcccacgcggcac
agtctacggttcaccaacatcactcacagtagtgtcactgtgtactgggaggtggcgcca
cctactggaacgattcagcacatctcgtacacgtctgacgccagcaatgtcatcgctaaa
gaggtggaaatccccggtggcagctcctcggtgaccctgaagtctctgacctctcagact
ccgtataacgtcaccctggccacctcacacagcgggctgaagacttcgctgcatctgtcg
ggaaactttacaaccttgaaggtgccgccccctactggcgtgaaagtggtagacatgagc
ggtgacagtgctgcggtggcgtgggatccgggcgctgaagacgtcacctcttatctgatc
aaatggattcctctgagcggagggaggccgagtcagctgtcagtccccggagatgagcac
agcgcggtcctcactgacttggagtacagcaccgagtaccaagtgtccatctccgcccgc
tacgccgatggatcacagagcgatgcttcctccgcccgctacaggacaggagataatcct
cggaagatgcccattggccgaggagggtttggacccaaccggacagacgggacgtgtcca
ttaatgaaggccaaagacggtgaagacgtgttccatggctacgacatgatggccgtcttt
ggactgtatgacaagctgtactcctccatcagcggggtctctattgacgcctttgtcctc
ggccgctcccggatctacaccatggcagagaacgcccagctgactgtatggaccagagaa
gcccatcctcacgggctcccccaggaacacgggctcagctttctccttcgcctgcccgcc
aatgccgctcgggaacctttcaccttatggcagctgacggatgaagatttccagccgatt
gtcgggataatcgcggatcccaatcatcagtctttgacttatttcaaccctgactacgag
ggaaacttgcaggaggtgaccttcgatgaagaagaagtgaagaagattttctatggcagc
ttccacaagttgcaagtggcagtttctaaaacaaacgttcgactctatgtggactgtcag
ctggtaacggaaaaggtgataaagcctatgggaaaggtgaccacattaggatttgagatg
ttggggaaactgaccagaaccaggggcccgaggagcggttcctcagcgttgcagctccag
tcattcctgatggtctgcggttcagagattcccatcggagatgggtgctgtgatgtcctg
gccaagagggatgagaaaacatgccctgccctcgcctccgcctgtacctgcacctccgac
gtccctgggccatccggccctcctgggcttccggggcctccaggacctcgagggtccaaa
ggcgagcagggcgagccaggaccagtgggagaccaaggcgtgtctggacaggtgggacca
gaaggtggcggcggacacacgggctcccctggaattcgcgggatggccgttaccggtccg
atgggacctccggggatgaagggtgaaaaaggtgacattggaggtcaaggactacagggt
cttctgggccccgaggggaaggcaggaaaggatggcaccatgggacccaagggcgtacgg
ggattggagggaaatacaggcccttccggcccaccgggacctcggggtattcaaggggtc
caaggattaattggaagtcctggtgaaagaggacctgttggagacgttgggcccacaggt
cttcctggcacccgaggcgagaaaggcgagaagggggaacctcaatctgccgccaccatt
taccatttggttaatcaggtgtgtgagagactcatacaggctcacctggtaaaactggaa
gcagtgctccatgagaaagatgtacaacctgtccccctctgggatttggaattaaaacca
ggagaacctggaccgccaggacttccggggctaccaggagaacaaggagaacctggattt
aatggtgcgttcggactgccagccaggaatggatacccaggagaacgaggatctaaagga
catcaaggagagaaaggagctccaggacaaagtaaagaaggcacagtagggcctcctgga
gctttaggtcttccaggaaaggatgtctttggaaatccagggcccatgggctttcctggg
cagcccggtccccctggaaatccgggaatccctggacattatgggcctccgggggtagta
ggtggctgtgactcttcttcctgctatgtatcaggagctgaagaactgaatgttatccct
tga
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