KEGG   Rana temporaria (common frog): 120920269
Entry
120920269         CDS       T07929                                 
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
rtem  Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rtem04131]
    120920269 (COPA)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rtem04147]
    120920269 (COPA)
Membrane trafficking [BR:rtem04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    120920269 (COPA)
Exosome [BR:rtem04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120920269 (COPA)
  Exosomal proteins of bladder cancer cells
   120920269 (COPA)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st DSE1_N WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_NOL10_N WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Aladin Beta-prop_SPT8 PAC11 CFAP251_N TRM82_WD Beta-prop_IFT140_1st ASA1 NBCH_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 120920269
NCBI-ProteinID: XP_040188181
LinkDB
Position
13:complement(111894824..111969110)
AA seq 1222 aa
MLTKFETKSARVKGLSFHPKRPWVLTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVDSD
VRGLTGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNILYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDSDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLSSVKIAKVKYVIWSSDMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWEESGV
FIYTTSNHIKYALTTGDHGIIRTLDLPIYITRVKGNNVYCLDRECRPRVLTIDPTEFKFK
MALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEASKALDDKSCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLRKMM
KIAEIRKDMSGQYQNALFLGDIDERVRILKNCGQKSLAYLTAATHGITDEEDKLRESFEP
EKEIIPEVDPDAKLLLPPPPVMPLDTNWPLLTVSKGFFEGSIASKAKGMAADIDVDTVGG
EGWGEDAELQLDEDGFVDAGEAFGDEAPGKGHEEGGGWDVEEDLELPPELDVPSGQSGTG
EDGFFVPPTKGSSPGQLWCNNSQLPVDHILAGSLETAMRLLHDQVGVVNFSPYKQHFLHT
FSRGRSTFQALPGLPAMYGYPQRNWKDAGLKNGLPAVGLKLSDLIQRLQLCYQLTTTGKF
EEAVEKFRLILLSVPLLVVDNKQEISEAQQLITICREYIVGLSMEIERKKLPKDTLEQQK
RICEMAAYFTHSNLQPVHMILVLRTAVNLFFKLKNFKTAAVFARRLLELGPKPEVAQQTR
KILAACEKSLTDTYQLNYDMHNPFDICAASYKPIYRGKPVEKCPLSGACYSPEYKGQICR
VSTVTEIGKDVIGLRISPLQFR
NT seq 3669 nt   +upstreamnt  +downstreamnt
atgctgaccaagttcgagaccaagtctgcccgggtgaagggcctgagcttccaccctaag
aggccatgggtcctcaccagcctgcacaatggcgtcatccagctgtgggattaccgcatg
tgtaccctcatagacaagttcgatgaacacgatggcccggtccggggtattgattttcat
aagcagcagcctctgtttgtctctggaggagatgactacaaaatcaaggtctggaattat
aagctccgacgctgtctgttcaccctgctgggtcacctggattatatccgcaccaccttc
ttccatcatgaatacccgtggattctcagcgcctccgatgatcaaaccatccggatctgg
aactggcagtctcgcacttgtgtctgcgtcctgacgggtcacaaccattacgtcatgtgc
gcccagttccacccatcggaagatctggtagtctctgccagtctggaccagacagtgcgc
gtttgggatatttctggcctgcgcaaaaagaacctttctccaggagcggtggactccgat
gtgcgtggactcacaggagtggatttgtttgggaccaccgacgcagtggtgaaacatgtt
ctggagggtcacgatcgtggtgtgaactgggccgccttccaccctaccatgcctctcatt
gtatcgggagctgatgacaggcaggtgaagatctggagaatgaacgaatccaaggcctgg
gaagtggacacttgccgtggacattacaacaacgtctcctgcgccgtcttccacccccga
caggagctgatcctgagcaactccgaagataagagcatccgcgtctgggatatgtccaag
agaaccggagtccagaccttccgccgagaccacgatcgcttctgggttctggctgctcac
cccaacctcaacctttttgcagcaggacatgacggaggaatgatcgtgttcaagttggaa
cgggaaaggccagcctacgccgtccacgggaacatcctgtactacgtaaaggaccgcttc
ctccgccaactggatttcaacagctcaaaggatgtggccgtcatgcagctcagaagtggc
tccaagttcccagtgttcaacatgtcctataacccagctgaaaacgccgtactgctctgc
acgagggccagcaacctggagaacagcacttatgacctgtacaccatccctaaggactcc
gactctcagaaccctgatgctcctgaagggaagcgctcctctgggctgaccgcggtctgg
gtggctcgcaatagattcgccgtcctggatcgcatgcattccatccttattaagaacctg
aagaacgagatcactaaaaaagttcaggtgccaaactgcgatgagattttctacgccggc
actgggaacctgcttctccgcgacgctgactccatcacgctgttcgatgttcagcagaaa
cgaacactgtcttctgtgaagatcgctaaagtcaaatacgtcatctggtcttctgacatg
tctcacgtggccctgctggctaaacatgcaatcatgatctgcaacagaaagctggaatct
ctgtgtaacattcacgagaacattcgtgtgaagagcggagcgtgggaggagagcggtgtc
ttcatctacaccaccagcaaccacatcaaatacgccctcaccaccggtgatcacggcatc
attcgtactctggatctgcccatctacatcacccgtgtgaagggtaacaacgtttactgt
ctggaccgggaatgtcgcccgcgggtgctcaccattgaccccacagaattcaaattcaaa
atggccctgattaacaggaaatacgatgaggtgctgcacatggtgagaaacgccaagctg
gtaggacagtcgatcattgcctacttgcagaagaagggttaccccgaggtggcgttgcac
tttgtgaaagacgagaagacgcgatttagcctggctctggagtgcggcaatattgagatt
gcgttagaagcctcgaaggctctggatgacaagagctgctgggagaagctgggcgaggtg
gctctgctgcagggcaaccatcagatcgtggagatgtgctaccagcgcaccaagaatttc
gacaagctcgccttcctttacctcatcaccgggaacctggagaaactgcgaaagatgatg
aagatcgcggagatccgtaaggacatgagcgggcagtaccagaatgccctcttcctggga
gacattgatgagagagtgaggatccttaagaactgcgggcagaagtctctggcttatctc
accgccgccacacacggcattacggatgaagaagacaaactgcgggaatccttcgaacca
gagaaagaaataattccagaagtagacccagatgccaaactgctgctcccacctcctcca
gttatgccgctggacaccaactggcctctgctgaccgtttccaagggcttctttgaagga
tccatagcaagtaaagccaaaggtatggcggcagacattgatgtggacactgtgggagga
gaaggttggggagaagatgcagagcttcagctggatgaagatggctttgtggatgcggga
gaggcatttggagacgaggctcctggaaaaggacatgaagaaggaggcggatgggacgtg
gaagaagatctggagcttccccctgaactggatgttccctctggccagtctggaaccgga
gaagatggcttctttgtgccacccaccaaaggcagcagcccgggacagttgtggtgcaac
aactcccagcttcccgtggatcacatcttggcgggttcactggaaacggcaatgcggctc
ctccatgatcaggtgggagtggtgaacttcagtccatacaagcagcatttcctccatacc
ttctcccgaggacgcagcaccttccaggctctgccggggcttcctgccatgtacggctac
ccacagcgcaactggaaggacgcgggattgaagaacggccttcccgcggtcggtctgaag
ctcagcgatctcatccagcggctgcagctgtgctaccagctcaccacgaccggcaagttt
gaagaggcggtggagaagttccgcttaatcctgctcagcgtcccccttctggtggtggac
aacaagcaggagatctccgaggctcagcagctgatcaccatttgcagagaatatattgtg
ggtctctccatggaaatcgagcgaaagaaacttcccaaagacaccctggagcagcagaag
aggatctgtgagatggcagcctacttcacacactccaacctgcagcccgtccacatgatc
ctggtgctgagaacggccgtcaatctcttcttcaaactcaagaacttcaaaacggccgca
gtgttcgccaggcggctgctggaactggggcccaagcccgaggtggcgcagcagactcgt
aagatcctggcagcgtgtgagaagagtctcaccgacacgtaccagctcaactacgacatg
cacaaccccttcgacatctgtgccgcctcatacaagcccatctaccgggggaagccggtg
gagaaatgcccgctcagcggcgcctgctacagcccggagtacaaaggacagatctgccga
gtctccacggtgacggaaattggaaaagatgtgattggtctgcggatcagccccctccag
ttccgttaa

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