Rana temporaria (common frog): 120920462
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Entry
120920462 CDS
T07929
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04137
Mitophagy - animal
rtem04140
Autophagy - animal
rtem04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120920462 (HIF1A)
04137 Mitophagy - animal
120920462 (HIF1A)
04148 Efferocytosis
120920462 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtem03000
]
120920462 (HIF1A)
Transcription factors [BR:
rtem03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120920462 (HIF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
120920462
NCBI-ProteinID:
XP_040188507
LinkDB
All DBs
Position
13:complement(34249166..34317584)
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AA seq
808 aa
AA seq
DB search
MEGTVVTDKKRISSERRKEKSRDAARCRRSKESEVFYELSHQLPLPHNVSSHLDKASIMR
LTISYLRIRRLLDAGDMDGESEMEKQLNCFYLKALEGFVLVLTEEGDMIYLSENVNKCMG
LTQFELTGHSVFDFTHPCDHEELREMLTFRNGPSKKGKEQITERSFFLRMKCTLTSRGRT
VNIKSATWKVLHCTGHMRVYDGCNSQNHCGYKKPPMTCMVLICEPIPHPSNIEFPLDSKT
FLSRHSLDMKFSYCDERVTELAGYEPDELLGQSVYDYYHALDSDHLTKAHHDMFTKGQVT
TGQYRMLAKKGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSDIVEKELILSLGQTESTL
VSSEPAESKMPQFFTKLADEEDDDANVLYEQLKKKAPEFLNVLAPDAGDEIIPLDFSSSD
SESQYDDAPLYNDVMLHSTSKPPENILVSPLPVPEKPKSVPLRSNADPALNKEVVIKMEC
SSEQLGLAFTIPQLSKPSSPSEISSNQSSTEPGTPAEYCFDEDINVAPEFKMDLVEKLFA
MDTEAKAPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSSMETDSAPIQSLGSMTNLFP
ASTASSSTDLKPITTEAMSDPKTIIVHPPTPTNKEVLSAPASPYNGNRSRTSSPVRTDKA
AVKERSRPGTPTITSPLNKRPAVLDDELSPKMIALHNVQRKRKIESDGPLFQAVGLGTIF
QTNVDPGSNSPLLWKCVKVSDSDKPTGPEQRTILLLSTDMASRLLGQSLDGTGLPQLTGY
DCEVNAPIQGNRNLLQGEDLLKALDQAN
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacagtggtcaccgacaagaaaaggatcagttcggagcgacggaaggagaaa
tctcgggatgctgcaaggtgtcgaagaagtaaagaatcggaggtgttttatgaactgtcc
caccagctgcctctgcctcacaatgtcagctctcatcttgataaagcctccataatgaga
ctcaccatcagctacctgcgtataagacggctcctcgatgcaggtgatatggatggagag
tctgaaatggagaaacagctgaattgtttttatttgaaagccttggagggatttgttttg
gtcctgactgaggaaggggatatgatctacctgtctgaaaacgtcaacaagtgcatggga
ctcactcagtttgagctgactgggcacagtgtgtttgacttcactcatccctgtgatcac
gaagagttgcgggagatgctgacatttagaaatggaccatcaaagaagggtaaagagcaa
atcacagagcgcagcttcttcctgcgtatgaagtgcaccctgacaagccgggggagaacc
gtgaatataaagtctgccacgtggaaggttcttcactgcacggggcacatgcgtgtgtat
gacggctgcaacagtcagaaccattgtggatacaaaaagccacccatgacctgcatggtg
ctgatctgcgaacccatccctcacccatcaaatattgaatttccattggacagtaaaacc
ttcctgagccgccacagccttgacatgaagttttcctactgtgatgaaagagttacagag
ctagcgggatatgagccagatgaactcctgggacagtcagtgtatgactattatcacgcc
ctggactctgaccatctgaccaaagcacaccatgacatgttcacaaaagggcaggtgaca
acaggacagtacagaatgctggcaaagaaaggtggctacgtgtgggtggagacgcaagcc
acagttatatacaacacaaagaactctcagccccagtgtatcgtgtgtgtgaactatgtc
ctcagtgacattgtggagaaagagctgatcttgtcccttggccagacagagtccactctg
gtgtcttcagaacctgctgaatcaaagatgcctcagttcttcaccaaactggctgacgag
gaggacgacgacgccaacgttttgtatgagcaacttaaaaagaaggcgcctgagttcctt
aatgttcttgcacctgatgctggagatgagatcatacccttggacttcagctctagtgat
tcagagtcgcagtatgacgatgccccattgtataatgacgtcatgctacactcaaccagt
aagcctcctgaaaacatcctggtgtctccacttccagtgccagagaagccaaagtctgtg
cctctgcgtagcaatgccgaccctgcactgaacaaggaggtagtgatcaagatggagtgt
agctcagaacagctggggctggcttttaccattccacagctctccaagccatctagtcca
tcagaaatcagcagcaaccagagctcaacagagcctggcactcctgcagaatattgtttt
gatgaggatataaacgttgccccggaatttaagatggacttggtagagaaactttttgcc
atggacacagaagcaaaggctccattctctacacaggaaacagacttggacctggagatg
ttggctccatatatcccaatggatgatgacttccagctaagaagctttgatcagctttcc
tcaatggagactgattccgctcctattcagtccctgggaagcatgaccaatctgttccct
gcctctacagcttcatcttccaccgatctgaaaccaatcaccacagaagccatgagcgat
cctaaaaccatcattgtgcacccaccgacaccaaccaataaagaggtgctgagtgccccc
gcttccccatataatggaaaccgaagtcgcacaagttctcctgtgagaacagacaaagca
gctgtaaaggagagatcccgccctggaactcctactataacaagtccactaaataaaaga
cctgcggtcctggatgatgaattgagcccaaagatgatcgctttacataatgtccagaga
aaacgcaaaattgaaagtgatggccctttgtttcaagcagtgggactaggaacgatattt
caaacgaatgttgatccaggctcaaactctcctctcttatggaaatgtgtcaaagtatcg
gactcagataagccaactggacctgaacaaagaacaatcctcttattgtctacagacatg
gccagtcgattgctcggacagtcgttagatggcactgggcttccacagctaaccggttat
gactgcgaagtgaacgcccccatacaaggaaaccgaaatctactacagggcgaggatcta
ttaaaagcccttgatcaagctaactga
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