Rana temporaria (common frog): 120924398
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Entry
120924398 CDS
T07929
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120924398 (HTT)
04131 Membrane trafficking [BR:
rtem04131
]
120924398 (HTT)
03029 Mitochondrial biogenesis [BR:
rtem03029
]
120924398 (HTT)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120924398 (HTT)
Membrane trafficking [BR:
rtem04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
120924398 (HTT)
Mitochondrial biogenesis [BR:
rtem03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
120924398 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
120924398
NCBI-ProteinID:
XP_040191277
LinkDB
All DBs
Position
1:623471115..623732157
Genome browser
AA seq
3117 aa
AA seq
DB search
MATMEKLMRAFESLKSFQQQQLGPTVPEELLPRAKKDPSTNKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSDDSESDVRMVADECLNKVVKALMDSNLPRLQLELYKEI
KKNGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTKICKRQEESVQETLAAAIPK
IMSAFGNFANDHEIKVLLKAFVANLKSSSPAIRRTAAGSAVQICQHSRRTQYFYTWLLNV
LLGLLIPIEDEQPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKEAEISPSQEQL
TQVYELTLHFTQHRDHNVVTGALELLQQIFRTPPIELLHVLTSSGAIQHISICRDESQRC
SRSGSIVELIAGGSSTCSPALSRKHKGKLHLGEEEGLEDESEGKSDVATAPFTAGSKKEG
SSDATTSSGVPTPASATSLDASTHDIITEQPRSQHTLQSDSVDLSSSDVPSTVTEGDEED
ILSRSSSQISTVQSDTNMDMNEGTTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVIDGAE
NLYSGMQIGQLQDEEDEGAIIHQEELADRFGNTALGLNQSHLLKSMGHSRQSSDSSVDRF
VTKEDVVEPGDLENKPSRIRGDIGHYTDGDAAPLVHCVRLLSASFLLTGQKDALVPDKDV
RVSVKALALSCVGAAVALYPESFFNKLYKLQTDTVDPIDVQYVSDILNYINHGDPQVRGA
TSILCGTIVYSILHRSRYDAEHWLAIVKSSSGNSFSLENCIPLLQKCLKDESSVTCKLAC
VSVRHCISSLLCSTYSEHGLQLMIDLLTLKNSSYWLVRTELLETLAEIDFRLVGFLEGKA
DGLHRGAHHYTGLLHLQDRVLNGVLISLLGDEDARVRHVATATLVKIVPKLFFHCDQGQA
DPIVAAARDQSSVYLKLLMHETQPASHFAVSTITRIYRGYSIVQSPTDVTMENNLSKVIT
AVSHALTTSTTRAMTFGCCEALCLLSIAYPVCTWSVGWHCGYVTSSSAQASRIQVYKNRG
RSFSISQQSPSDEPRKSCTAGMTNMILSLLSSAWFPLDLSAHQDALILAGNLLAATAPKS
LKNPWTAEDEANQTANKQEEPWPALGDRSMVGLVDQLFIHLLKAINICSHVIDDVPPGPV
VKTTLPSLTNPPSLSPIRRKGKERESVEQTTVPLSPKKVSDTTPASRPADASGPAQTSKS
VGSFYHLPSYLKLYDVLKATYANYKVTLDLQNNNEKFGSFLRSALDVLSQVLELATLTDI
GKCVEEILGYLKSCFSREPVIVTICVQQLLKTLFGTNLASQFEALYSNPSKTQGKAQRLG
SSNLRPGLYHYCFMAPYTHFTQALADASLRNMVQADQEQDASGWFDVLQKVSSQLKNSIT
NVTKHRADKNTIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLD
SDQVFIGFVLKQFEYIEVGQFRESEAIIPNVFFFLVLLSYERYHSKQIIGIPKIIQLCDG
IMASGRKAVTHAIPALQPIVHDLFVLRGANKADAGKELETQKEVVVSMLLRLIQYHQVLE
MFILVLQQCHKENEDKWKRLSRQIADIILPMLSKQQMHIDSHEALGVLNTLFETLAPSSL
RPVDMLLRSMFVIPYTMASVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSISPLLI
SCPNIAKLREGEIYQQSTENSDEQSQEMVPPEETFSRFLLQLVGILLEDIVHKELKVDLT
EQQHTFYCQQLGTLLMCLVHIFKSGTFRRITNAASRLFKGDGDSGNYYTLESLSEHVESM
FPTHPSLVLLWCQFLLLIDYTNYNWWSEVHQTLKRNSLSSTKLLLSPQMSTDSDEPEPES
KLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAIH
RNSAASGLFIQAINSRCENLATPTSLKKTLQCLEGIHLSQSGAVLMLYIDKLLCTPFRVL
ARMVDTLACRRVEMLLAAPSQNSISQVPLEELDRIQEYLQSSSLAQRHQRLYSLLDRFRA
TVASDTVSPLPLVTSHPLDGDGHPRLETLDPDEDWYVSLVRSQCYTHSDSALLEGAELVN
KIPQADRLTFITNKKFNMSMLGPCLALGVNQMIGDQDSSFFETTQSVLLDLISQTVKQLP
DTHQIFQPLKPMEKDSYGEKLIIVLGDSEVYYSLVTLCRALAQYLRSLPKIPQSFHIQQE
NEVDILKFVVMSVEAVSLHFVQEPIPLSVDLQAVLECCCLTLQQIGLWNLLASAEYVTHS
CSLITCIRFIIEAVAVEPGEQLLSPERKKDSSSEDQAGDEADSRVKGAVFIKTACTMMSE
MVDSLQTVLLYGHKRNCNIAAFLTPVLRNIFVSLARLPAVNSYTRVPPLVWKLGWSPKMG
GEYGTSLPEIPVEFLQEKEVFKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPIVMDQE
ESQHEEDTERTQINVLAVQAITSLVLSAMTIPSAGNPAISCLEQQPRNKTLKALDTRFGR
KLSVVRGIVEEEIQALISRRDNIATHHAYQAWDPVPCLSAATTGALISHEKLLLQINTER
EIGNMSYKLGQVSIHSVWLGNSITPLRPEELDEDEEDENDTPAPSSPPMSPINSRKHRAG
VDIHSCSQFLLELYSQWILPANTGKKTPVILISEVVRSLLAVSDLFTERNQFEMMYTALT
ELHKQHPSEDEILIQYLVPAICKAAAVLGMDKSIAEPVSRLLESTLRSTHMPSRIGALHG
ILYVLECDLLDDTAKQLIPIISDYLLSNLRGIAHCVNLHNQQHILVMCAAAFYLIENYPL
DVGPDFTAGIIQMCGVMVSGSEESTPSMIYHCVLRGLERLLLSEQLSRLDGEALVKLSVD
RVNMHSPHRAMTALGLMLTCMYTGKEKISPGRTTDPSPAAPDSESVIVAMERVSVLFDRI
RKGFPFEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMAAVVYKVFQTLHA
TGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSKWISAILPHVISRMGKSEP
VDVNLFCLVAIDFYRHQIDEELDRRAFQSVFELVAAPGSPYHSLLMCLQNVNKTTVF
NT seq
9354 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaactaatgagagccttcgagtccctgaaatccttccagcaacag
cagcttggaccgaccgtgcctgaggagctgctaccccgagcgaagaaagatccttcgaca
aacaagaaagatcgtgtgaatcactgtctgacaatatgcgagaacatcgtcgctcagtct
ttgaggaattctcccgagttccagaagttgctggggattgccatggagctcttcctgttg
tgcagtgatgattcagagtctgacgtccggatggtggctgatgagtgtctcaataaagtg
gtgaaagctttgatggattcaaaccttccaaggctacaacttgaactgtacaaagaaata
aaaaagaatggtgccccgcggagcctcagagctgccctctggaggtttgctgaactggca
caccttgttcgacctcagaagtgcaggccatacttggtgaacttgcttccttgtctcaca
aaaatatgtaagcgccaggaagagtcggtacaagaaacgcttgctgctgctattccaaaa
atcatgtctgcttttggaaactttgcaaatgaccacgaaatcaaggttctgctaaaagct
tttgtagccaatctaaaatcaagttcgcctgcaatccgacgcacagcagctggttctgcc
gtccaaatctgccagcattcccggagaacgcagtatttctacacgtggcttctcaatgtc
cttctgggtcttcttattcctattgaggatgaacagccaactctcttaatcttgggagtc
ttattaacactacgctacctgatcccattactacagcaacaagtgaaagacaccagtcta
aaaggcagcttcggagttactcgaaaagaagcggaaatatctccatctcaagagcagcta
acacaggtttatgaactgacgttacattttactcagcacagagatcacaatgtggtgaca
ggtgctctggagctgctgcagcagatttttaggactcctcccattgagctgctccacgtc
ctgacatcttctggagccattcagcatatcagcatttgtcgagacgagtctcagagatgc
agccgcagtggtagcattgtggagctcatagctggtgggagctctacctgcagtcctgct
ctttccaggaaacacaaaggtaagctacacttgggggaagaggaaggattggaagacgag
tcagaaggcaagtcggatgttgccacggctccttttacagctgggtctaagaaagagggg
tcatcggatgcaaccacgtcctcaggcgtcccaactccagcatctgccacctctctggac
gcttcaactcatgacatcatcacagagcagccgcggtcccaacataccctgcagtctgac
tctgtagatctcagcagctcagatgtccccagtactgttacagagggggatgaagaggac
attttaagccgcagttccagtcagatcagcactgtccagtctgacaccaacatggacatg
aacgagggaaccacccaggcttcctcaccagtgagcgacagctcgcagacaaccacagaa
ggtccagattctgctgtcaccccttcggacagctcggaaattgtgatcgatggtgctgag
aacctgtattccggaatgcagattgggcagctccaggatgaggaagatgaaggagcgatc
atccaccaagaagagttggctgatcgttttgggaacacggctcttgggctaaatcagagt
catttgctaaaatccatgggtcacagccgccagtcatcagatagcagcgtggatcgcttt
gtaacaaaggaggacgtggtggagcctggcgacctggagaacaagccatctcggataaga
ggagacattggacactacacagacggagatgctgctccccttgttcactgcgttcgtctg
ttatctgcttccttcctgctcaccggacagaaggatgctcttgtaccagacaaagatgtg
cgggtgagcgtgaaagcactggcattgagctgtgttggggcagctgtggccttgtatcct
gaatccttcttcaacaagctgtacaaactgcagacagacacagtggatccaatagatgtg
caatatgtttcagacatcctaaattacatcaaccatggggacccacaggtcaggggggcc
acatctattctctgtggcacgatcgtctactccatcctccacaggtcccgatacgatgct
gagcactggttggccattgttaaaagttcttcagggaatagtttttcactggaaaattgc
attcctttgttgcaaaaatgtctgaaagatgaatcttctgtgacctgcaagctggcatgt
gtgtcagtcaggcattgcatatccagtttattgtgtagcacgtacagtgaacacgggtta
cagctgatgatcgatttgctcactttgaagaacagctcttactggcttgtcaggacagaa
ctgctggagactctggcagagatcgattttaggttagtcggtttcctggaaggtaaagca
gatggtctacatagaggtgcacatcattatactgggctgttacatcttcaggatcgagtg
ctgaacggtgttcttattagccttttgggagacgaagatgctcgggtgaggcatgtagcc
acagcaactttagtcaagatagttccaaaattgtttttccattgtgatcaaggacaagct
gaccctatagtggcagcggcaagagaccaaagcagcgtctatctgaaactgctcatgcat
gagacccagccagcatcccattttgctgtcagtacaatcacaaggatctacagggggtac
agtattgtgcagagccccacagatgttactatggagaataatctgtccaaggttatcact
gcagtttctcacgcactgacaacatcaaccactcgagcaatgacgtttggctgctgtgaa
gctttgtgcctgttatccattgcttatccagtgtgcacatggagtgttgggtggcattgt
ggatatgtgacatcatctagtgcacaggcttcccggatccaagtctataagaatcgggga
cgatcgtttagtatttcccagcagagcccctccgatgaaccacgcaaaagctgcactgcc
ggtatgaccaacatgatcctgtcactgctgtcctcagcctggtttcccctcgatctttct
gctcaccaggatgccttgatactggctggaaatttgttggcagctactgcacctaaatct
ttaaagaacccctggacagcagaagatgaagccaaccagacggctaacaagcaagaggag
ccgtggccagcgcttggtgaccgatcgatggttggtctggtggatcagctgttcattcat
ttactgaaagccatcaacatatgttctcatgtgattgatgatgttcctccaggtcctgta
gtgaagaccactcttccatctctaactaaccctccttctttgagtcctatccggaggaaa
gggaaggagcgagagagtgttgagcagacgacagtgccgctgagcccaaaaaaagtcagt
gataccactccagcttcgcgaccggcagatgcttctggcccagctcaaacaagcaaatct
gttggcagtttctaccatcttccatcatatttaaagttgtatgatgttctgaaagccaca
tatgccaactataaggtaacactggatcttcagaacaacaatgaaaagtttgggagtttt
cttcgctctgctctggatgttctctctcaggttttggaactagctacactgaccgacatc
ggcaagtgtgtggaagaaattctgggttatctgaagtcctgtttcagcagggagccagtg
atagtcacaatctgtgtgcaacagctattaaagaccctttttggaaccaatttagcatcc
cagtttgaggcgctatactcaaaccctagcaaaacccagggaaaagcacagcgccttggc
tcctctaacctgcgacctggcttataccattactgcttcatggctccatatacacacttt
acccaggctctagcagatgccagtctacgtaacatggtccaagctgatcaagagcaagac
gcatcagggtggtttgatgtgctccagaaggtttcgtctcaactgaagaacagcattacc
aatgttacgaagcaccgagcagacaagaatactattcataaccatattcgcctgtttgag
cccctggtgattaaagcgttgaagcagtacaccaccaccacatctgtgcagctgcagaga
caggttctcgatcttctagctcaacttgtccaacttcgagtcaactactgtctgctagat
tctgatcaggtgttcattggttttgtgctgaagcagtttgagtacattgaagtaggtcag
ttcagggaatcggaagccatcattcccaatgtgttcttcttcctggtattgctgtcctat
gaaaggtaccactctaagcagatcatcggcattcctaaaatcattcagctgtgtgacggc
atcatggccagtgggagaaaagctgtgacccatgctattccagccctgcagcccatagtc
catgacctatttgttttacgaggagccaataaagctgatgcagggaaagagctggagact
cagaaggaagtggtggtgtccatgttgctccgacttatccagtaccatcaggtcctagag
atgtttatcttggtattgcagcagtgtcacaaagagaatgaagacaagtggaagaggctc
tctcggcagatagcggacattattctgcctatgttgtcaaagcagcagatgcacatagac
tcccatgaagctctgggtgtgttgaacactctttttgaaactcttgctccctcttcccta
cgtcctgtggatatgctgctgagaagtatgtttgtcatcccatacactatggcctctgtg
agtactgtccagctttggatatctggaatactggccatcctcagagttctcatctcacag
tctacagaggatattgttctttcccggatccaggagctttccatctccccgcttctcatc
tcatgtccgaatattgccaaattgcgggaaggagaaatttaccaacaaagtactgagaac
tctgatgagcagagccaggaaatggtcccacctgaggagacgttctctcggtttctgtta
cagcttgtaggaattcttcttgaggacatagtacacaaggagctaaaggtggacctgact
gaacagcagcatacgttttactgccagcagctaggaacccttctcatgtgccttgtccac
atcttcaaatcaggaacgttccgaagaataactaatgcagcttcacgacttttcaagggg
gatggcgacagtggcaactactacactttggagagccttagtgagcatgtggaatccatg
ttcccaacccacccttccctggtgctgctgtggtgccagttcctgctgctcatagactac
acgaactataactggtggtccgaagtacatcagacgctcaagaggaacagtctgtctagc
accaaactgctgctaagtccccagatgtcaactgacagcgatgagcctgagccggagtcc
aaacttggcatgtgtaaccgggagatagtgcggagaggggccctcatcctgttctgtgac
tatgtgtgtcagaacttgcatgattcagagcatcttacctggctgatagtcaatcacgtt
caggatctcatcaacctatcgcatgaacctccagtgcaggatttcattagtgcaatacac
agaaactcagctgccagtggtctcttcatccaagccataaattctcgctgtgagaaccta
gcaacgccaacttctctgaagaagacattgcagtgcttggaagggattcacctgagtcag
tctggcgcagtgttgatgttgtatatagacaagctgctgtgtaccccatttcgtgtgctg
gctcgcatggtggatacactagcctgtcgccgggtagaaatgctgttggcggcgccatct
cagaatagtatttctcaggtacctttagaagagttggacagaatacaggaatatctgcag
agcagtagtttagcacaaaggcaccaaagactttattctctgctggacagatttcgggcc
actgtagcttcagacacggttagccccttacctttggtgacctctcacccgctggatggg
gatggtcacccacgactggaaacgctggacccagatgaggactggtatgtgtccctggta
cgttcccagtgttacacacactctgattctgcactgctggaaggagcagaactggtgaac
aaaatacctcaggctgatcgtctcaccttcataaccaacaagaagttcaacatgagcatg
ctaggcccctgtttggctttaggagtgaatcagatgatcggggatcaggacagcagtttc
tttgaaacaacccagtctgtcctgctggatctcatctcacagaccgttaagcagctgccg
gacactcatcagatctttcagcctctgaagccaatggagaaagactcctacggggagaaa
ctaatcatagtgttgggtgactctgaagtatattactcccttgtcaccctttgtcgagcg
ctggcgcaatacctgcggtcactccccaaaatacctcagtcttttcacatacagcaggaa
aatgaagtggacatactgaagtttgtggtcatgtcagtagaggcagtgtccttgcatttt
gtgcaagaaccaataccactgagtgtggatctccaagctgtgctggagtgttgctgtctg
actttacaacagatcggactgtggaatttgctggcctctgcagagtatgtgacccactcc
tgctcccttatcacctgcattcgctttattatagaggctgttgcagttgaacctggagag
caacttctgagcccagagaggaagaaagacagttcgtctgaagaccaagcaggagatgag
gcagattcacgagtaaaaggagctgtatttattaagactgcctgcaccatgatgtctgag
atggtggattccctgcagacagttttgttgtacggacacaagagaaactgcaatattgca
gcatttctcactccagtgttacggaacatatttgtcagcctggctagattgcctgcagtc
aacagctacaccagagtccctccactggtgtggaaattgggttggtctcccaaaatggga
ggggaatatggaacttcacttcctgaaatccctgttgagtttctgcaggagaaagaagta
ttcaaagaatttatctaccgcattaatacattgggatggacaagtcgcacccagtttgag
gagacttgggccacactacttggagttctggtcacccagcctattgtaatggaccaagag
gaaagccagcatgaggaagacacagagcgaacacaaataaatgtcctcgctgtacaagcc
atcacttctctggtcctcagtgctatgactattccctctgctggaaacccagctatcagc
tgcctagaacagcagccacggaacaagacccttaaagccctggataccaggtttggcagg
aagctgagtgttgttcgaggaatagtagaggaagaaatccaagctttgatatccagaagg
gacaacattgccacacatcatgcttatcaagcctgggatcccgtgccttgtttatctgct
gcaaccacaggagcactgatcagtcatgagaagctgctactgcagatcaacacagagcga
gaaattggaaacatgagctataagttgggtcaggtctccatccactcagtttggcttggg
aacagtattacaccactgagaccagaagagttggatgaggatgaagaggatgagaatgat
actccagcaccatcatcaccccctatgtctccaattaactccaggaaacatcgggccgga
gtggacatacattcctgttcacagtttctccttgagctgtacagtcagtggattctccct
gctaacactgggaagaagactccagtcatcttgatcagtgaggttgtaagatcgctgctg
gcggtatctgatttattcacggagaggaaccagtttgagatgatgtacacggctttaact
gagctccataaacagcacccatccgaggatgaaattctcattcagtatctggtgcctgca
atctgcaaggcggctgccgtgctgggaatggataaatctattgcagagcctgtcagccgg
ctcctggagagcacactgcgaagtactcacatgcccagccgcattggagctctgcacggc
atcctctatgtgctggagtgtgacctcctggatgacacggccaagcagctcatacccatc
atcagtgattacctgctgtccaatctgaggggcattgcacactgtgtaaatctgcacaac
cagcagcacattctggtaatgtgtgcggctgccttttacttaattgaaaactacccattg
gatgttgggccagactttactgcaggcattatacagatgtgtggagtgatggtatcgggg
agcgaggaatccacaccctccatgatctatcattgtgtgctcagaggtttggagcgcctc
ctgctgtctgagcagctttccaggctggatggagaggcactggtgaagcttagtgtggac
agagtgaatatgcacagcccacacagggccatgactgccttaggattgatgctgacatgc
atgtacacaggtaaagagaagatcagcccaggtcgtaccacagatccaagtcctgctgcc
ccagacagtgagtcggtcattgttgccatggagcgtgtatctgtgctttttgacagaatc
cggaagggattcccctttgaggcaagggtggtggccaggattcttccacagttcttggat
gactttttccctcctcaagatgtaatgaacaaagtcattggggagtttttatccaatcag
caaccctacccacaattcatggcagctgttgtctataaggttttccaaactcttcatgcc
actggccagtcctccatggtacgagactgggtgatgctctctctctccaacttcacacag
agaactccggtggccatggcaatgtggagcctctcctgcttttttgtcagtgcgtctact
agcaagtggatttctgcaattcttccacatgtgatcagccgaatgggcaagtctgaaccg
gtggacgtaaatttgttctgtttagtggccatagacttttacaggcaccagatcgatgaa
gagctggaccgccgggccttccagtcagtgtttgagttggtggctgcaccgggaagcccg
taccacagcctgctgatgtgtttgcagaatgtgaataagacaacggtgttctaa
DBGET
integrated database retrieval system
