Rana temporaria (common frog): 120926771
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Entry
120926771 CDS
T07929
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03015
mRNA surveillance pathway
rtem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120926771 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
120926771 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120926771 (PABPC4)
03041 Spliceosome [BR:
rtem03041
]
120926771 (PABPC4)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120926771 (PABPC4)
mRNA cycle factors
Stress granule specific factors
120926771 (PABPC4)
Spliceosome [BR:
rtem03041
]
Complex C
Other components
Complex C specific factors
120926771 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RBD_RDR6
RRM_10
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
120926771
NCBI-ProteinID:
XP_040192889
LinkDB
All DBs
Position
2:complement(270603968..270634998)
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AA seq
631 aa
AA seq
DB search
MHTATNSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRRERE
AELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFEK
HEDANKAVDDMNGKDVNGKVMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTLISQFQPAPGGYFVPAVPQAQSRP
AYYAPNHIAQMRPGPRWQQAGRPQGKHLGFQPMPNTVRQSGPRQSIRHIPPLSSHGTRGI
SSVAQRVGVSSATQTMGPRQPVTVPPSRSVPQYKYTRCPLPGVQQLQQTPQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQVMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVEEAVAVLQAHQAKKDAAQKVGIVAATS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcacacggctaccaacagctaccctatggcgtccctgtatgtgggagacctgcaccct
gatgtcacggaggccatgctgtatgagaagttcagtcctgcaggacctgtcctgtctata
cgagtgtgcagggacatgatcacacggagatcgctcggatatgcctatgtcaacttccag
cagcctgcagatgctgaacgtgctctggacactatgaactttgatgtgataaaaggaaag
cccatacggattatgtggtcacagcgggatccatctcttagaaaatctggtgtgggcaat
gttttcataaagaatcttgataaatcgatagacaacaaagcactttatgacactttttct
gcgtttggcaacattctttcatgtaaggtggtgtgtgatgagaatggctccaaggggtac
gcttttgtgcactttgagacacaagacgctgcagacagagccatagagaagatgaacggc
atgctgctgaacgaccgcaaagtgtttgttgggcgttttaaatgcaggcgggagagggag
gcagaacttggagccaaagccaaggaatttacaaacgtttacatcaagaattttggagaa
gatatggatgatgagcgactaaaggagactttcagcaaatacggcaagactctgagcgtt
aaggtgatgactgaccccagtggcaagtccaaagggtttggctttgtcagctttgaaaaa
catgaagatgcaaataaggccgtggatgacatgaatggcaaagatgtcaatggaaaggtg
atgtttgtcggcagagcgcaaaaaaaggttgagcgacaagcagagctgaaacggcgattt
gagcagttgaagcaagagagaattagccgctatcagggtgtaaatttatatattaaaaat
ctggatgacacaattgatgatgagaagctacggaaggagttttccccgtttgggtcaata
acaagcgccaaggtaatgctggaggatggacgcagcaaaggatttggatttgtttgcttt
tcctcacctgaagaagccactaaagcagtcactgaaatgaatggaagaattgtaggctcg
aagcctctttatgttgcattggctcaaagaaaggaagaaagaaaagctcatcttacgaat
cagtatatgcaacgtatagctggaatgagggccctgcctgccaatactctaattagccaa
tttcaaccagctccgggagggtactttgtgccagcagttccgcaggctcaaagccgacct
gcatactatgctcctaatcatatagctcaaatgcgccctggcccacgatggcagcaagca
ggacgacctcagggtaagcatttaggctttcagcccatgcctaacacagtgcgacagagt
ggcccccgccagtcaatacgccatatcccacctttgagttctcacggaacacgtggcatc
tccagtgtagcccagagagttggggtttcctccgctactcagacaatgggacctcgtcag
ccagttactgttccaccatcccgatctgtgcctcagtacaaatatacacggtgtccactc
cctggagtgcaacaactacagcagacacctcaacctgcagtccatgtacagggacaggaa
cctctaactgcctcaatgttggctgctgctccaccccaagaacaaaaacagatgttggga
gaacgtctcttccctctcattcaagtcatgcatccttcattggcgggtaagattacagga
atgctgctggagattgacaattcagagctgctacacatgctggaatccccagagtctctg
cgctctaaggtggaagaagcagttgctgttttgcaagctcaccaagccaagaaagatgct
gctcagaaggtgggaatcgttgctgctacctcctga
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