Rana temporaria (common frog): 120926872
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Entry
120926872 CDS
T07929
Symbol
SRRM1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03013
Nucleocytoplasmic transport
rtem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120926872 (SRRM1)
03015 mRNA surveillance pathway
120926872 (SRRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120926872 (SRRM1)
03041 Spliceosome [BR:
rtem03041
]
120926872 (SRRM1)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120926872 (SRRM1)
Spliceosome [BR:
rtem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
120926872 (SRRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
120926872
NCBI-ProteinID:
XP_040193079
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Position
2:284500762..284572018
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AA seq
924 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVEMSKVNLEVIKPWITKRVTEIL
GFEDDVVIDFIFNQLEVKNPDSKMMQINLTGFLNGRNAREFMGELWPLLLSAQENIAGIP
TAFLELKKEEIKQRQIEQEKLASLKKQDDDKDRRDKDDRDKRDRSRTPRRRKSRSSSPRR
RSPSRRERKRSHSHSPRHKTKSPSPAPVFEKKEAEIQEPEPSLKVKEPSVQEATSSSAVQ
QHHLTDVAVISDIVKASKPDLVADTKETSPEPNSRKPKEKERHRHRSRSRSKSKSKSHSP
SHPRTRRRHRSRSRSYSPRRRPSPRRRPSPRRRSPPRRMPPPPRHKRSRSPVRRRRRSSA
SASGSSSSSSSSRSPPPPKKPPKRMSSSPPRKPRRSSPSASPPRRRFRQSPPPSPPPKRH
SPSPQSSRLRKARGSVSPPRAQVPKHKIPEKRKTPSPPPKPRKRDTSDSDDEKGGKMGAS
DSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRIAVKNGEVGRRRRHSASRSPSPSKKRP
RDPSPRMQTVKRWQSPLLKSRRRRSPSPPPARRRRSPSPAPPPRRRRSPSPQRRRSPSPH
RHSSSQRRYSPPIQRRYSPSPPPKRRTSSPLPQPPPKRRVSQSPPPSKHRVSHSPPQKHK
GSPGGKRRSPSLSSKHRKGTSPSRSGRETRSPPQTKRSSPSPRPRAAISSESPPTHRRGG
SSSPPRRQQSPSPSSRPIRRVSRTPEPKKPKKESPSPQPAGGSSSRSVSGSPEPAPKKQV
VPPSRSRSRSPSGNWSPAPAPAKKTKSATPSPSPAQTSDQDGGGGKKKKKKKDKKHKKEK
KHKKHKKHKKEKAAAAVSPASPPSPPSPASPASPASPEPGEPDADIEAKKETESDGDGNL
DDLEKHLREKALRSMRKAQVSPQP
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggcttcttccgcggcacaagtgcagagcaggataatcgctttagcaacaaa
cagaagaagcttttgaagcagttaaagtttgcagaatgcctggaaaagaaggtggaaatg
agcaaagtaaacctggaagtaatcaagccttggataacaaagcgtgtaacagaaattctg
gggtttgaagacgatgtggtcattgactttattttcaaccagctggaagtgaagaaccca
gactctaaaatgatgcaaattaacctgactggctttctaaatggaagaaacgcccgggaa
tttatgggagagctatggccactactactgagtgcccaggaaaacattgctggaattcct
acagcattccttgaactgaaaaaagaagaaatcaagcagagacagattgagcaagagaag
cttgcatctctaaagaagcaagatgatgacaaagacagaagagacaaagatgatagagac
aaaagggatcgatcccgaactccaagaaggcgcaaatcgcggtcatcctcgccacggaga
aggtctccaagcaggagagagaggaaaagaagccactctcattcaccaagacacaaaact
aaaagtccaagccctgctccagtttttgagaaaaaggaggcagaaattcaagaacctgag
ccctctctaaaagtgaaggaaccatctgtacaagaggcaacatcatcaagtgcagtacag
cagcatcatttgactgatgtggcagtgatcagtgacatagtgaaagcttccaaaccagat
cttgtggcagatacgaaggaaacttcacctgagccaaactcacgaaagccaaaagagaaa
gagagacatcgtcacagatcacgctcgcgctccaaatcaaaatccaagtctcattcccct
tcccaccctagaacacgtaggcgtcatcgatcaagatcaaggtcttatagccctaggaga
agacctagccctcggcgtagaccttcaccgaggaggagaagtccacctcgccgtatgccg
ccaccacctaggcacaagagaagtaggagtccagtcaggcgaaggcgacgctcttctgca
tcagcgtctggaagcagcagctcctcctcttcatcacggtcaccaccacctccaaagaaa
ccacccaagagaatgtcctctagcccaccacgcaagcctcgtcgttcctccccatctgca
agtcctccaagaaggcgttttaggcagtctcctccaccaagcccacctccaaaaaggcat
tctccttccccacagtcctctcgactcagaaaggcacgaggctctgtgtctcctcctcgt
gcacaagtaccaaaacacaaaattccagaaaagcggaagactccatcgccacctccaaaa
cctcgcaaaagagacacatctgattcagatgatgaaaaaggaggcaaaatgggagcgtca
gattcggtacagcagcgtcgtcagtacagaagacagaaccaacagtcgtcctctgactct
ggatcatcttcctcttcagaggatgagaggccaaagcgcattgcagtgaagaatggagag
gttggcagaaggcgcaggcattcagcatcaagaagtccttcaccttcaaagaagagacct
cgtgatccatctccacggatgcagactgtgaaaaggtggcaatcacctcttcttaaaagc
agaagaaggaggagtccatctccacctcctgcccgaagaaggcgcagtccttctcctgct
ccacctcccaggcggcgtcgatctccatctcctcaaaggcgcagatctccatcacctcac
aggcattcctcctctcaaagacggtactcaccacccattcaaagaagatactccccctct
cctcccccaaaaaggagaacttcttcaccactgccccagcctcctccaaaacgtcgagta
tcacaatctcctcctccatcaaagcacagagtatcacattcacctccacaaaaacataaa
gggtcacctggaggaaagagacgttctccatcactatcctctaaacaccgtaaaggaact
tctcctagccgctcagggcgagaaacccgctccccaccacagactaaacgttcttcacct
tctccacgtccacgagcagctataagctctgagagtcctccaactcacagaagaggaggg
tcctcatctcctcccaggaggcagcagtccccttcaccaagcagtaggccaattagacga
gtatcaaggactccagaaccgaagaaacctaaaaaggaatctcccagtccacagcctgca
ggaggctcctcatcacgatctgtttctgggtccccggagccagctcccaaaaaacaagta
gtccccccatcccggtctagatctcgttctccatctggcaactggtccccagctccagca
cctgctaagaagaccaagagtgccacacccagcccgtctccagctcagacctctgatcaa
gatggtggtggaggtaaaaagaaaaaaaagaaaaaggacaagaaacacaaaaaggagaag
aagcacaagaaacacaaaaaacataagaaagagaaggctgcagctgctgtatctcctgca
tcgcctccatctcctccatcgccagcatcgcctgcatctcctgcatctccagaacctggt
gaacctgatgcagacattgaagccaagaaggagactgaaagtgatggcgatggaaatcta
gacgatttggagaagcatttacgagagaaggctctgcgttccatgagaaaagcgcaggtt
tcccctcagccctag
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