Rana temporaria (common frog): 120927038
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Entry
120927038 CDS
T07929
Symbol
WDR7
Name
(RefSeq) WD repeat-containing protein 7 isoform X1
KO
K24738
rabconnectin-3b
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120927038 (WDR7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtem04131
]
120927038 (WDR7)
Membrane trafficking [BR:
rtem04131
]
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
120927038 (WDR7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_DCAF12
WDR72_alpha-sol
WDR90_beta-prop_4th
Beta-prop_RSE1_2nd
KduI
PD40
LRS4
DUF1746
SAA
Motif
Other DBs
NCBI-GeneID:
120927038
NCBI-ProteinID:
XP_040193399
LinkDB
All DBs
Position
1:47131691..47715135
Genome browser
AA seq
1528 aa
AA seq
DB search
MTGNSLVLPIILWGRKAPTHCISNVLVMDDMSTIITGCHDGQICLWDLSPELEINPRALL
FGHTASITCLSKASASSDRQYIVSASESGEMCLWDVNDGRCVEFTKLACTHTGIQFYQFS
AGTQREGRLLCHGHYPEVLVVDASSLDVMYTLVSKISPDWISSMSIIRSHRTQEDTVVAV
SVTGILKVWIITAEVHRMQDTEPVFEEESKPIYCQNCQSISICAFTQSSLLVVCAKYWRV
FDAGDYTLLCSVPSEDGQMWTGGDFISADKVIIWTEDGQSFIYKLPASCIPASDSFRIDV
GKALENSIPPLLYSVMPKEDKKGLERFDVEAVVQVPACEHLSDQAKVLELYTPRTLLHMQ
PPEFIVLICPPVTRFFYGRREPFHKLLIQGDSSGRLSIWSIPDDLNEQENMEGLKITMTT
SLQEAFDKLTHRPAGIIDQLSVMPNTEPLKVTASVYIPSHGRLVCGREDGSIVIVPATQT
AIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSSRYDQRYLISGGVDFSVIVWD
IFSGEMKHIFCVHGGEITQLLVPPDSCSTRVQHCICSVASDHSVGLLSLRERKCIMLASR
HLFPIQVIKWRPSDDYLVVGCSDGSVYVWQMDTGALDRCVMGITAVEILNACDEAVPAAV
DALSHSAVNLKQAMTRRSLAALKTVAHHKLQTLATNLLASEASDKGNLPKYSNNSLMVQA
IKTNVTDSDIHLLFFDVEALIIQLLTEEASRPNTALISPESLQKASGSSDKGGSFLGGKR
AAVLFQQVKETIKENIKEHLLDDDDEDEEAMRQKRDQSDPEYRSSKSKPLTLLEYNLTMD
TAKLFMSCLHAWGLNATLDEVCLERLGMLKPHCPVSFGLLSRGGHMSLMLPGFNHSVFKA
ADEIIEVVKKMSVTEGLGKGNYGVSRAVTTQHLLSLISLANTLMSMTNATFIGDHMKKAP
QRPPRSGSPDYTKVKPSPQSSSNVMQGQIKQAVAADSSARTDFDPSGSDRTLHSCFSVNE
GWSQLAAMHCVMLPDLLGLDQFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIGQSG
RKDAIDFWAPYLPQYVDTIMSPGVTAESIQAGSASPDSGGSEVKVQEEEHDLVDDDLAAG
CLSNLPPMKKAFPSYEERRKQATAIVLLGVIGAEFGAEIEPAKLLTRPRSSSQIPEGFGL
TSGGSNYSLARHTCKALTFLLLQPPSPKLPPHSTIRRTAIDLIGRGFTVWEPYMDVSAVL
MGLLELCADAEKQLANITIGLPLSPAADSARSARHALSLIATARPPAFITTIAKEVHRHT
ALAANTQSQQNIHTTALARAKAEILRVIEILVEKMPSDVVDLLVEVMDIIMYCLEGSLLK
KKGLQDCFPSICRFYMVGYCERSHRIAVGGRHGSVALYDIRTGKCQNIHGHKGPITAVSF
APDGRYLATYSNKDSHISFWQMNTSLLGSIGMLNSAPQLRCIKTYQVPPVQPASPGSLNA
LKLARLIWTSNRNVILMAHDGKEHRFMV
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atgactggaaacagtctggttcttcccattatactctgggggcgcaaagctcccacacac
tgtatatccaatgtgttggtgatggatgatatgagcaccattataacaggatgccatgat
gggcagatctgcttgtgggatctctccccggaactggaaatcaatcctcgggctcttctg
tttggacacacggcctccatcacctgcttatctaaagcatctgcgtccagtgaccggcaa
tatatcgtcagtgcgtctgaaagtggggagatgtgtctttgggatgtaaatgatggaaga
tgcgttgagttcactaagcttgcatgtacacacacgggtatacagttctaccagttctcg
gctgggactcagcgagagggaaggttactttgccatggacactacccagaagtccttgtt
gtggacgccagcagtctggatgtcatgtacacactggtgtcaaagatctctccagactgg
atcagctcaatgagcattatccgctctcacaggacacaagaagatacagttgtagctgtt
tcagtaacaggaattctcaaggtgtggatcattactgctgaggtccaccgtatgcaggac
acagagccagtgtttgaggaggaatccaaaccgatttattgccagaactgccaaagcatt
tccatctgcgcattcactcaaagttctctcttggttgtgtgtgctaaatattggagggtc
ttcgatgctggagactacactctgttgtgttctgtcccaagtgaagatggacagatgtgg
actggaggggattttatttctgcagataaagttatcatctggactgaagatgggcaaagc
tttatttacaaacttccagctagctgtattcctgccagcgattcattccgaattgatgtt
gggaaagcattggagaattctattccccctttactgtacagcgtcatgccgaaggaggac
aaaaagggactggagaggtttgacgttgaagctgtagtccaggttccagcatgtgagcac
ctgtctgaccaagcaaaagtcttagagctgtacacgccgcggactctgcttcacatgcag
ccccctgaattcatagtactgatctgccctccggtgaccaggtttttctatggacgtaga
gaacccttccataagcttctaattcagggggattcatctgggagactcagtatctggagc
atacctgatgacctcaacgaacaggaaaacatggaaggattaaaaatcacaatgacaaca
tctcttcaggaggcattcgacaagctgactcatcgtcctgctgggataattgaccagctc
agtgtgatgccaaacacagaaccattgaaagttactgccagtgtctacatcccatcccac
ggacgtctggtttgtggccgagaagatggcagcatagtcattgtcccagccacgcagacc
gccatagtccagctgctacaaggggagcacatgctacgaagaggctggcctccacataga
acattgcgtggacaccggaataaggtgacctgcttactatatccccatcaagtgtcctct
cgttatgatcagcgctatctgatatctgggggagtggacttttctgtgatcgtgtgggac
atcttttctggcgagatgaaacatatcttctgtgtgcatggtggggaaatcacccaactg
cttgtcccacctgacagctgcagtacgcgagtacaacactgcatctgctcggttgccagt
gatcactctgtcggcctcttaagcctccgagaaagaaagtgcatcatgttggcttctcgc
catctctttcccatccaagtcatcaagtggagaccatcggacgattatctggtggttggc
tgttcagatggttctgtctacgtctggcagatggataccggtgcactggatcgttgtgtc
atgggtatcacggcagtagaaatactgaatgcttgtgatgaggcagtccctgccgcagtg
gatgcactcagccattcggcagtcaacttaaaacaggcaatgaccagacgtagtcttgcg
gcactgaaaacggtggcacatcacaaactgcaaactcttgctaccaatctcttggcatca
gaagcttcagacaaagggaatttacctaaatattcaaataactccctaatggtgcaagca
ataaagacaaatgtaacagactcggacatacacctgctcttctttgatgtggaagctcta
attattcagctcctgactgaagaagcctccaggccaaacaccgcacttatctccccagag
agtttacaaaaagcatctggcagctctgacaaagggggctcttttctgggtggtaaacga
gcagccgtgcttttccagcaggtcaaggaaaccatcaaagagaacattaaagagcatctc
ctggatgatgatgatgaagacgaagaagccatgcgacagaaaagagaccagagcgaccca
gagtaccgttctagcaagtcaaagccattaacgctacttgagtacaacctaaccatggac
acagccaagctcttcatgtcatgccttcatgcctggggcttgaatgcaacgcttgatgag
gtctgcctagaacgccttgggatgcttaagccgcattgcccggtatcgtttggcctactc
tcaagaggtggccacatgtctctgatgcttcccggctttaaccatagtgtctttaaagca
gctgatgaaatcatagaagttgtgaagaaaatgtcagttactgaaggacttggaaaaggc
aattatggtgtgtcacgtgctgtcactacacaacatcttctttcacttatatcgctggcc
aacacactcatgagcatgaccaatgcaacgttcattggagaccacatgaagaaagcccct
caaaggcctccgagatccggctctccagattacacaaaggtaaagccttcccctcagagc
tccagcaacgtaatgcaaggacagataaaacaagctgttgctgctgattcttctgctcgc
actgacttcgatccctctgggtctgatcgcactttacattcctgtttctcagtcaatgaa
ggttggagccagttagctgccatgcattgtgtcatgctgcctgatctcttaggcctggac
cagtttagaccaccacttcttgagatgctggcacggaggtggcaggacagatgtctggag
gtgagggaagctgcccaggctctgttacttgccgaactgcgacgaatcgggcagtctgga
cgcaaagacgcaattgatttttgggcgccatatttaccgcaatatgttgataccattatg
tcacctggtgtgacagcagagtctattcaagctggcagcgcaagccccgactcgggaggg
tcagaggttaaagttcaagaggaagagcatgaccttgtggatgacgatcttgcagcaggt
tgcctttccaaccttcccccaatgaagaaagcatttccatcatatgaagagaggaggaag
caagctaccgctattgtcttactaggggtgattggagcagagtttggagcagagattgag
cctgcaaaactactgaccagaccacgcagttctagtcagattccagaggggtttggactg
accagcggaggctccaactactcccttgcccgacacacctgcaaagctttgaccttctta
ctgttgcagccacctagccccaagctcccccctcacagcaccatccgcaggacagctatt
gatctgattggacgtggcttcacggtgtgggagccgtatatggatgtatcggccgtgctg
atggggcttctggaactttgtgctgatgcagaaaagcagcttgctaacatcacaatcggg
ttgcccctgagcccggcagcggactcggcccgctcggcacgacacgctctgtcgctcatt
gccacggccagaccacccgccttcataacaacgattgctaaggaggtccacaggcacacg
gctctggctgcaaacacgcaatctcagcaaaatatccacaccactgctctggcccgagcg
aaggcagagattctgagggttatagaaatcctggtcgagaaaatgccatcggatgtcgtg
gatctcttggtggaggtgatggacattattatgtactgcttggaaggatctttgttgaag
aaaaaaggactacaggactgcttcccttccatttgccggttctacatggtcggttactgt
gagcggagccatagaatagcagtaggtggccgtcatggctcagtggccttgtatgacata
cggactggaaaatgtcagaatatccatggtcacaaaggaccaattacagcagtttcgttt
gcccccgacggacgttatcttgccacttactccaacaaagacagccatatctccttctgg
cagatgaacacatccttactgggaagtatcggaatgctgaactcagcgcctcaactgcgg
tgtattaaaacataccaggtgccacccgtccagccagcctcccctggatccctcaacgcc
ttgaagctggccagactcatctggacctccaaccgcaatgttatcttaatggcccatgat
gggaaggagcacagatttatggtgtag
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integrated database retrieval system
