Rana temporaria (common frog): 120927330
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Entry
120927330 CDS
T07929
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120927330 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120927330 (SNRNP40)
Spliceosome [BR:
rtem03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120927330 (SNRNP40)
Complex C
U5 SnRNP specific factors
120927330 (SNRNP40)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
Beta-prop_NWD2_C
PEP5_VPS11_N
Beta-prop_HPS5
WDR54
Beta-prop_IFT140_2nd
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
120927330
NCBI-ProteinID:
XP_040193856
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All DBs
Position
2:384589264..384604757
Genome browser
AA seq
338 aa
AA seq
DB search
MIEQNKRKGMELVAAAAAKKPRTEMVASGPPRSSSLQAPIMLLSGHEGEVYCCKFHPNGL
TLASSGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSLLFSASTDKTVAIWDCE
TGERVKRLKGHTSFVNSCYPARRGPQLICTGSDDGTVKLWDFRKKAAVQTFQNTYQVLAV
TFNDTSDQIISGGIDNDIKVWDLRQNKLMYTMRGHCDSVTGLSLSSEGSYLLSNAMDNTV
RIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSSDGSKIAAGSADRFVYVWDTTSRRI
VYKLPGHAGSINEIAFHPEESIVLSASSDKRLYMGEIQ
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacagaacaagaggaaagggatggagctggtcgctgcggcggcggctaaaaag
ccgagaactgagatggtggcatcgggacctccaagatcatccagtctccaagcacctatt
atgctgttgtctggacacgagggggaagtttactgctgcaaatttcatcccaatgggctt
acactggcttcgtcaggattcgacagattaatccttctgtggaatgtgtatggcgactgt
gacaactatgcaaccctgaagggtcatagtggagctgtgatggaattgcattacaataca
gatggcagcttgctgttctctgcatcaacggacaaaaccgttgcaatttgggattgtgaa
actggagagagagtgaaaaggctaaaaggacacacgtcatttgtaaattcctgttatcct
gccaggagaggtccacagctcatctgtacgggcagtgatgatgggacagtgaagctttgg
gacttcaggaaaaaggcagcagtgcagactttccaaaatacatatcaagtattagctgtt
accttcaatgacaccagtgaccagattatctcaggaggcatagataatgacataaaggtt
tgggatctaagacagaacaagctgatgtatacaatgagaggtcattgtgattctgtgaca
ggcctaagtcttagttctgaaggttcttacttgctctcgaatgcaatggataatacagta
cgcatatgggatgttcgcccgttcgccccaaaagaaagatgtgtaaaaatatttcaagga
aatgtgcataattttgaaaagaatctgttgcgttgttcctggtcttcagatggcagcaaa
atagcagctggatcagcagacaggtttgtgtatgtttgggacaccacatcccgcaggatt
gtatataagcttccaggccatgcaggctctatcaatgaaattgctttccatcctgaagag
tccattgttttatctgcttccagtgataaaagactatatatgggagaaatccaatga
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