Rana temporaria (common frog): 120927355
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Entry
120927355 CDS
T07929
Symbol
ZFR
Name
(RefSeq) zinc finger RNA-binding protein isoform X1
KO
K13203
zinc finger RNA-binding protein
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120927355 (ZFR)
Spliceosome [BR:
rtem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120927355 (ZFR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DZF_N
DZF_C
zf-met
zf-C2H2_jaz
zf-U1
Motif
Other DBs
NCBI-GeneID:
120927355
NCBI-ProteinID:
XP_040193900
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All DBs
Position
1:complement(53281838..53388415)
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AA seq
1060 aa
AA seq
DB search
MIPICPVVSFTYVPSRLGEEAKMATGNYFGFTHGAAAQYSQQPASGVAYSHPTTVGSYTV
HQAPVAAHTVTAAYAPSAATVAVARPAPAAVAAAASAAAYGGYPTAHTATDYGYAQRQQE
APPPPPPVTTQNYQDSYSYVRSTAPAVTYDNKTYYQQPTATAAAVAAQPQQSVAESYYQT
APFALSLPVAPKVGYSQGAAQYTQAQQTRQVTAIKPANPNPATTTFSIYPVSSTVQPVAA
TAVPSYTQGATYSTTAVTYSGAAYSGYEAAVYSAASSYYHQQQQQQQQKQAAAAAAVAAS
AAWTGSNFTKKTTFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEA
ALKASQNTTSSSTAVRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPI
PSTEPNVVNQSVTSAAVSKSAASSNSTSSSSLTTPASKLSTSTSGSSVGTMGASKLSTIS
SNNIVKKITTPKITFVGGNKLQSTGNKIEDSKDGVKVTPSSSVQSPESKMDAMSEAAQTL
AALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKV
NPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEE
QHHWDDRRRGPDGSYHHGPPGPPGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATI
YPTEEELQSVQKIVSLTERALKLVSDAMAEQDKSKVKETEEKKDLSKERALKGVLRVGVL
AKGLLLRGDRNVSLVLLCAEKPTKSLLTRIAENLPKQLTVISPEKYEVVSSIPESAIILN
SCVEPKMQVTITLTSPIMREENSRDGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQA
RANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFEC
ISSGIILKGGPGLLDPCEKDPYDTLATMNEQQREDITSSAQFALRLLAFRQIHKVLGMDP
LSQMNQRFNIHNNRKRRRDSDGVDSFEAEGKKDKKDYDNF
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgattcctatatgccctgtagtttctttcacctatgtgcccagccggcttggtgaagag
gccaaaatggctactggcaactactttgggtttacccacggcgctgccgcccagtacagc
cagcaaccagcatcaggcgtagcctattcgcatccaaccactgtgggtagctacactgtt
catcaggctccagtggcggctcacactgtgacagcagcctatgctccatcagcagccaca
gttgctgtagctcggcccgctcccgctgccgtggcagctgctgcgtctgcagcagcttat
gggggctatccgacagctcatacagcgacagattacggctacgctcaacgtcagcaggaa
gctcctccgccaccacctccagtcacaacacagaattaccaggactcgtactcctatgtc
cggtccacagctcctgctgtaacatatgacaacaagacttactaccagcagccaaccgca
actgcagcagctgtagctgctcagcctcagcaatctgtggcggaatcctactaccaaaca
gctcctttcgcattgtctcttccagttgcccccaaggttggctacagccagggtgctgct
cagtacacacaagctcaacagactcggcaagtgacagcgatcaagcctgccaacccaaat
ccagcaacaactaccttctccatatatcccgtgtcctccactgtgcaacctgttgctgcc
actgcggttccctcgtacacacagggcgccacctacagcacaactgctgttacttactct
ggtgcggcatactcgggttatgaagcagcagtgtactcggctgcctcttcctattatcac
caacagcagcagcagcaacagcaaaaacaggcggcggctgctgcagcggtggccgcctct
gccgcctggactgggtccaactttactaagaaaactacttttcagaataagcaactgaag
cctaaacagcctcccaaaccacctcagatccactactgtgatgtctgtaagattagctgt
gctggacctcagacgtacaaggagcatttagaaggccaaaagcacaagaagaaagaggcg
gccttaaaagcctcccaaaacacaaccagcagcagtacagcagtccgcgggacccagaac
cagctccgctgtgagctctgtgatgtgtcgtgtacaggggcagatgcctatgctgcccac
atcaggggtgctaaacaccaaaaggttgtgaagttgcacaccaaacttggcaaacccatt
ccgtcaacagaaccaaatgtcgtgaaccagtctgtcacctcggcagctgtctccaagtca
gctgcctcatcaaacagtacatccagctcctctcttactacacctgcttcaaaactgtcc
acgtctacatccggctcatctgttggcactatgggagcaagcaaactgtctaccatctca
tctaacaacatcgttaagaaaataaccacgccaaaaataacttttgtgggtggtaataaa
ttgcagtccactgggaataagattgaagacagcaaagacggtgttaaggttactcctagt
tccagtgtgcagtcacccgaatccaagatggatgcaatgtccgaagctgctcagaccctt
gctgctcttcagagtgatgtccagcctgtgggtcatgattatgttgaagaggtacgaaat
gatgaaggaaaagttatcagattccactgtaagctgtgtgaatgcagctttaatgatccc
aatgctaaagaaatgcatcttaaagggaggaggcatcggctgcagtataagaaaaaggta
aacccagatttacaggtggaagtgaagccaagcattcgagccaggaagatccaagaggag
aagatgcggaaacagatgcagaaagaagaatactggcgaaggcgagaagaggaggagcgg
tggaggatggagatgaggcgctacgaagaagacatgtactggaggagaatggaggaggag
cagcatcattgggatgaccgacggagaggaccggacggaagctatcaccacggtccccct
ggacctcctggattattgggagtgagaccagggatgccaccacaaccacaagggccagct
cctctacggcgaccagattcctccgatgaccgatatgttatgaccaaacatgccaccatc
tacccaacagaggaggaactgcagtctgtgcagaaaatagtgtctctgactgaacgcgca
ttaaaactggtctctgacgccatggctgaacaagacaagagtaaggtgaaggagaccgaa
gagaagaaggatcttagcaaagagagagcactgaagggagtcctgcgtgttggtgttctg
gcaaaaggattgcttctgcgtggtgatcgaaatgtcagccttgttttactctgtgctgaa
aaaccaactaagtctttgcttactcgtatagcagagaatcttcccaagcagcttactgtg
atcagccctgagaaatatgaggtggtgtcttccattccggaatctgctattattttaaat
tcctgcgtagaacctaaaatgcaggtcacaataacgctgacctctccgatcatgagagaa
gaaaactcgagggatggagatgtaacctcgggtatggtgaaagacccaccggacgtcttg
gacaggcaaaaatgccttgacgctctggctgctctccgccacgctaagtggttccaggct
agagccaatggtttgcagtcctgtgtaatcatcatccgtatcctgcgtgacctgtgccag
cgtgtgccaacatggtctgactttccaagctgggcaatggagctgttggtggagaaggca
atcagcagtgcttctagtccccagagtcccggagatgccttaaggagagttttcgagtgc
atttcatctggtatcattctgaagggtggtccaggcttacttgatccttgtgaaaaggat
ccctatgacactctggctacaatgaatgaacagcagcgggaggatataacttctagtgca
cagtttgcactgaggctccttgcatttagacagatccacaaagtcctcggtatggatcct
ctgtcccagatgaaccaacgctttaacattcacaataaccgcaagcgaaggcgagacagc
gatggtgtggacagtttcgaagccgaagggaagaaggacaaaaaagactatgataacttc
taa
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