Rana temporaria (common frog): 120927423
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Entry
120927423 CDS
T07929
Symbol
DDX3X
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120927423 (DDX3X)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120927423 (DDX3X)
03041 Spliceosome [BR:
rtem03041
]
120927423 (DDX3X)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120927423 (DDX3X)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120927423 (DDX3X)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120927423 (DDX3X)
mRNA cycle factors
Common to processing body (P body) and stress granule
120927423 (DDX3X)
Spliceosome [BR:
rtem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120927423 (DDX3X)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120927423 (DDX3X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120927423
NCBI-ProteinID:
XP_040194026
LinkDB
All DBs
Position
2:complement(397310601..397335265)
Genome browser
AA seq
721 aa
AA seq
DB search
MSHVAVENVHSLDQQFAGLDLTSDSQGGGSATKGRYIPPHLRNKEASRQGYPRCQYPTVD
VYKGYGDWWSQRTDSSWDAGRGGNGYVNGTHDDRANGYASRGAGTGAGTAAGTGRTDKGF
YDRDNAGWNSRDKDAYSSFGSRGERGKPGVFSDRGSGTRRSDDRRVEGGERSGMGRYGGG
NSRWNDERSDEDDWSKPLAPNDRVEQELFSGGNTGINFEKYDDIPVEATGQNCPPHIETF
QDVCMGEIIMGNIALTRYTRPTPVQKHAIPIIIGKRDLMACAQTGSGKTAAFLLPILSQI
FADGPGEASSNLKDNGRYGRRKQYPLSLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYG
GADIGQQIRDLERGGHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIR
RIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWV
EEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREE
ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT
SFFNEKNINITKDLLDLLVEAKQEVPSWLENMAYEQHHKTSSRGGRSKSSRFSGGFGARD
YRQSSSSSSGFGGSSRGGRSSGHGGSRGFGGGGGYGGGFYNSGDGYGGNYGGSSQVDWWG
N
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgttcacagtctagaccagcagtttgctggcctagac
ttgacttctgactctcaaggtggtggctctgcaactaaagggcgttacattcctcctcat
ttaagaaacaaagaagcttcaaggcaaggttatccaaggtgtcagtacccaactgtagat
gtgtataagggatacggtgattggtggtcccaaagaactgattcaagctgggatgctgga
cggggtggaaatggctatgtgaatggcacacatgatgaccgtgcgaatggatatgcaagt
agaggtgctggaacaggcgctggaactgcagctggcactggccgtactgacaaaggattt
tatgatagagacaatgctgggtggaattcaagagacaaagatgcttacagcagctttgga
tcacgtggtgagcgtggaaaaccaggtgtatttagtgatagaggaagtggaacacggaga
tctgatgaccgtcgtgtagaaggcggtgagcgatctggtatgggtagatatggtggtgga
aatagccgttggaatgatgaacgaagtgatgaagacgattggtcaaagcctcttgctcca
aatgatcgtgtagagcaggagcttttctctggcggcaatactggcataaactttgagaag
tatgacgacattccagtcgaagcaactggccaaaactgccctccacatattgaaactttc
caggatgtctgcatgggggaaataatcatgggaaatattgcactcacccgatacactcga
ccaacaccagtccagaagcatgctattcccattattataggaaagagggacctgatggcc
tgtgctcagacaggttctggaaaaactgcagcttttttactacccattctcagtcagatc
tttgcagatggtcctggagaagcatcatctaacttaaaggataacgggagatatggaagg
cgaaaacagtacccactgtcccttgttctcgctccaacaagagaacttgctgtacagatc
tatgaggaggccagaaagtttgcatacagatcaaaggtgcgtccttgtgttgtatatggg
ggagcagatattgggcagcagatcagagacttggagcgaggcggtcatttgcttgttgcc
actcctgggcgacttgttgacatgatggaacgaggaaagattggcctggattattgcaag
tatttggtgttggatgaggcagacagaatgcttgacatgggatttgaacctcaaattaga
cgaattgttgaacaagacaccatgcctcccaagggtgttcgtcagactatgatgttcagt
gccactttccccaaggaaatccagattcttgctcgtgatttcttggaagaatatatcttt
ttggcagtaggtagagtaggctctacatctgaaaatattacacagaaagtagtctgggtg
gaagaaatggacaagcgttcatttttattggatctccttaatgccacaggtaaagactca
ttaacgttggtgtttgtggaaacaaagaagggtgcagatgctcttgaggacttcttgtac
catgagggctatgcttgcacaagcatccatggagaccgctctcagagagaccgagaagaa
gcacttcatcagttccgttctggaaaaagccctattcttgtcgccactgctgttgcagcc
agaggacttgatatttcaaatgtcaagcatgtaataaactttgatctgcccagtgacatt
gaggagtatgtgcacagaattggtcgtacagggcgtgtgggcaatttgggtcttgcaaca
tcatttttcaatgagaagaatataaatataacaaaggatttattagatcttctggtggaa
gcgaaacaagaagtaccatcctggctggagaatatggcctatgaacagcatcacaagacc
agcagtcgtggggggcgttcaaagagcagtcgcttcagcggtggatttggtgccagagac
tacagacagagcagtagctccagcagcggctttggcgggagcagtcgtggaggtagaagc
agtggtcatggaggcagtcggggatttggaggaggtggtggatatggtggtggcttctat
aacagcggcgacggctatggaggaaattacggtggaagttcccaggttgactggtggggc
aactaa
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