Rana temporaria (common frog): 120927602
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Entry
120927602 CDS
T07929
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120927602 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120927602 (PRPF8)
Spliceosome [BR:
rtem03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120927602 (PRPF8)
Complex C
U5 SnRNP specific factors
120927602 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
120927602
NCBI-ProteinID:
XP_040194317
LinkDB
All DBs
Position
2:438836900..438873111
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRPGVPPMPGPPPIAPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDNEEDAPVMDWFYDHQPLRDNRKYVNGTTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGRTRR
AVDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWDTTEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDVATE
AAHPIRLYCRYIDRIHIFFRFSADDARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGGKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
NQLPQHEYLKEMEPLGWVHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQASWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDMYS
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggctggggtgtttccatacagacctggggttccccccatgcctggaccaccaccaata
gcgccagattacatgtctgaagaaaagttacaggagaaagctcgcaaatggcaacagctg
caggccaaacgttatgcagagaaaaggaaatttggctttgtggatgctcagaaagaagac
atgcccccagagcacgtgcggaaaatcatccgtgaccatggtgacatgacaaacaggaag
ttccgtcatgataagagggtctacctcggagctctgaagtatatgccacacgcagtgctg
aaattactagaaaacatgcccatgccttgggagcagattagagatgtgccagtgttgtat
catattactggagccatttcttttgtcaacgagatcccttgggttattgaacctgtttac
atagcacaatgggggtccatgtggatcatgatgaggagagaaaagcgagacaggcgtcat
tttaagaggatgagatttcccccctttgatgatgaagagccacctctggattatgctgat
aacattcttgatgtggagcccctggaggctattcagctggagctggacaatgaagaagat
gctccagtcatggactggttctatgatcaccagcccctaagagacaacagaaagtatgtg
aatgggacaacataccaacgttggcagttcacacttcctatgatgtccactctgtaccga
ctggccaatcagctgctcacagatctagttgatgacaactacttttacctttttgatttg
aaagcttttttcacatctaaggctttaaacatggcaattccaggtgggccaaaatttgag
ccattggttcgcgatataaatttgcaggatgaagattggaatgagttcaatgatattaac
aaaatcattattcgccagccaattcgcacagaatacaaaatcgcatttccgtatctgtac
aacaatctccctcatcatgtgcatctgacatggtaccatacaccaaatgtggttttcata
aaaacagaggatcccgatctcccagctttttattttgatcctcttatcaaccccatatca
cacagacattctgtaaagagtcaggagcctttaccagatgatgatgaagagtttgagttg
ccagaatatgtggagccattcctcaaggaaactcctctttatacagacaacacagccaat
ggcatagctctgctttgggcgcctcgcccattcaacctgaggtctggtagaacacgaagg
gctgttgacatacctctggtgaagaactggtaccgggagcattgtccagctggtcagcct
gttaaagttcgtgtctcttatcagaaactgctgaagtactatgtccttaatgctcttaaa
catagaccacctaaggcccagaaaaagaggtatctattccgctcattcaaagctacaaag
tttttccaatccactaagctggactgggtggaggttggacttcaggtttgtcgccaaggc
tacaacatgctgaacttgctgatccacagaaagaacttgaattaccttcacttggactac
aatttcaatttgaaacctgtaaaaactcttaccaccaaggaacgtaagaagtctcgattt
ggcaatgcctttcatttgtgccgagaggttcttcgtctgaccaaactggtggtggatagt
catgtgcagtataggcttggtaacgtggatgccttccagttatcagatggacttcagtac
atctttgcccacgtgggccagctgactggcatgtacagatacaagtacaaacttatgaga
cagatccgaatgtgcaaagacttgaaacacttaatctattacaggtttaacacaggtcca
gtgggaaaaggaccaggttgtggcttttgggcagctgggtggagagtttggcttttcttt
atgcgcggcatcaccccgttgctggagagatggcttggaaatcttctggctagacagttt
gaaggtcgtcattccaagggggtagcaaaaaccgtgacaaagcagagagtggaatctcac
tttgatctggagctgagagcagccgtcatgcatgacattttggacatgatgccagagggt
atcaagcagaataaagcaaggactatcctgcaacacttgagtgaagcctggagatgctgg
aaggcaaacattccctggaaggtacctggtcttcctacacctattgagaacatgattctc
cggtatgtaaaagcaaaggctgattggtggacaaacactgctcattacaacagagagcgt
attcgtcgtggtgcaactgtggacaaaactgtgtgcaagaagaacttgggccgtctgact
cgtctgtacctgaaggctgagcaagaaagacaacacaactacctaaaggatgggccctac
atcactgctgaagaagctgtagcagtatacaccaccacagtgcactggctggaaagcaga
aggttctctcccataccattccctcctctttcatacaaacatgatactaaactgctcatc
ctggctcttgagagattgaaggaagcatacagtgtgaagtcccgtttaaatcagtctcaa
cgagaagagttggggttgattgaacaagcgtatgacaatccccatgaagctttgtccaga
atcaagcgtcacttgctcactcaaagagctttcaaggaggtgggaatagagttcatggat
ctttacagtcacctagtccctgtctatgatgttgagcctctcgagaagatcactgatgct
tacctggatcaatatctgtggtatgaagcagacaagagacgactcttccctccttggatc
aaacctgcagacacagaaccccctcctttgcttgtgtacaagtggtgccaaggcatcaac
aacttgcaggatgtgtgggacaccactgaaggagaatgcaatgtaatgcttgagtctcgg
tttgagaagatgtatgaaaagatcgatttgactctgctgaatcgtcttctgcgtctaatt
gtcgatcacaacattgctgattacatgacagccaaaaacaacgttgtgatcaattacaaa
gacatgaatcacacaaactcctatggcattattcgaggactccagtttgcttctttcatt
gttcagtattatggtctggtgatggatctgttagtcctaggtttgcacagggccagtgag
atggctggcccacctcaaatgccaaatgatttcttgagtttccaagatgtggccacagaa
gctgctcaccccattcgcttgtattgcagatacattgatcgcatccacatttttttccga
ttttcagccgatgatgctcgagatcttattcagaggtaccttacagaacatccagatccc
aataatgagaacattgtagggtacaacaataaaaagtgttggccgagagatgccagaatg
agacttatgaagcatgatgttaatcttggccgcgctgtgttctgggacattaaaaaccgt
cttcctcgttctgtcactactgtacaatgggagaacagctttgtgtctgtgtacagtaaa
gacaaccccaacttgctcttcaacatgtgcggatttgagtgccgaattttgcccaagtgt
cgtacaagctatgaggaattcactcataaggatggagtctggaacctgcagaatgaggtg
accaaagaacgtacagctcagtgtttcctgcgagtagatgatgagtccatgcagagattc
cacaacagagttcgtcaaattctgatggcgtcaggatccactacatttacgaagattgtg
aacaagtggaatactgccttgataggcctgatgacttatttccgtgaggctgtggtaaac
acacaagagttgcttgatctattggtgaaatgtgaaaacaaaatccaaaccagaattaag
attggtctgaactctaagatgcccagtcgtttccctcctgtggtcttctacacacccaaa
gagcttggtggtttaggaatgttgtctatgggacacgtgctcatcccacagtctgacctc
aggtggtcgaagcagacagatgttggcatcacccatttccgttcgggtatgagtcatgag
gaggatcagttgatccctaacttgtatcgctacattcagccctgggagagcgagttcatt
gactctcagcgagtctgggctgaatacgctctgaaaaggcaggaggccatcgctcagaac
agacgtcttacactggaagacttggaggattcttgggatcgaggcattccacgaattaac
accctgttccagaaggacaggcacaccctggcctatgacaagggctggagagttcgtaca
gacttcaaacaatatcaggtactaaaacagaatccattctggtggacacatcaacgtcat
gatggaaagctttggaatttgaataactaccgtacagatatgatccaggcacttggagga
gtggaggggattctggagcacacattgttcaaaggcacatatttccccacatgggaaggt
ctcttctgggaaaaagccagcggctttgaggaatcgatgaaatggaagaaactaaccaat
gctcagagatctggtttgaatcagatccccaacagaaggttcactctctggtggtcccct
acaatcaaccgagccaatgtgtatgttggtttccaggtgcagctggatttgactggcatt
ttcatgcacggcaaaattcccactttgaagatctctttgattcagattttcagggctcac
ttgtggcaaaagatccatgagagcattgtaatggatctgtgccaggtgtttgaccaagag
ctggatgcactagagattgagactgtccagaaggagaccatccatcccagaaagtcttat
aagatgaattcatcttgtgctgatatcttgctattcgcttcctataagtggaatgtctct
cgtccttctctactggctgactccaaggatgtcatggacagcacaacaacacagaagtac
tggattgatatccagttgagatggggagactatgactctcatgacattgaacgatatgcc
cgtgcaaagtttctggactataccactgataacatgagtatctacccatcacctactggt
gtgctgattgccatagacctggcttataatctccacagtgcttatgggaattggtttcct
ggtgggaaacctcttattcagcaagcaatggccaagataatgaaggctaaccctgctctt
tatgtgctgcgtgagcgtatccgtaagggattgcagctgtactcctcagagcccactgag
ccttatctgtcttctcagaactatggcgagctcttctccaatcagatcatttggtttgtg
gatgacaccaatgtgtacagagtaaccatccacaagacatttgaaggtaacttgacaacc
aagcccataaatggggctattttcatctttaaccccaggactggacagcttttcttgaag
attattcacacctctgtttgggcaggacagaagcgattgggtcagctggccaagtggaag
actgcagaagaagttgctgctttgattcgatctttgccagttgaggaacagccgaaacag
atcattgtcaccaggaagggcatgttggatcctcttgaggtgcatttgcttgacttccca
aacatcgtgatcaaaggctctgagttgcaactgcctttccaggcctgtctaaaggtggaa
aagtttggagatttgattcttaaagcaacagagccccagatggttcttttcaatctctat
gatgactggctgaagaccatttcttcatacacagcattctctcgactgattctaattctg
agagcattgcatgtcaacaatgaccgtgcaaaagtcatcctaaagccagacaagacgaca
atcactgaacctcatcatatctggcccacactgactgatgaggaatggatcaaggtagaa
gttcagctaaaggatctgatcttggctgactacggaaagaaaaacaatgtaaatgttgca
tccctaactcagtctgaaatcagggatatcattttgggtatggaaatctctgcaccatcc
cagcagaggcaacagattgctgagattgagaagcagacaaaggaacagtctcagctcact
gctacccaaacacgcactgttaacaaacatggagatgagatcatcacttcaaccacgagt
aactacgagacgcagaccttctcctcaaagaccgaatggcgtgtcagagctatatcggct
gcaaatcttcacctgcgaaccaaccacatctatgtgtcatctgatgatatcaaggaaact
ggttacacatacatcctgcctaagaatgtgctgaagaagtttatttgcatttcagatctg
cgagctcagatcgcaggctacttgtacggagtgagtccaccagataatccacaagtgaag
gagatccgttgtattgtgatggttccacagtggggaactcaccaaactgttcacttgcct
aatcagctgccccagcatgagtatttgaaggaaatggaacctctgggatgggttcacaca
cagccaaatgagtctccacagctgtctccacaagatgtcacctctcatgctaaaatcatg
gcagacaacccagcctgggatggagaaaaaactataattattacctgcagcttcacccct
ggttcctgtacattaactgcttataaactgacccccagtggatatgaatggggaaggcag
aacacggataaagggaacaacccaaaaggctacctaccatctcattatgaaagagtccag
atgctgttatctgatcgcttcctagggttcttcatggtgcctggacaagcatcttggaat
tacaacttcatgggtgtcaggcatgatccaaacatgaaatatgagttgcaactggctaac
cccaaggaattttaccatgaagtccaccgcccctcgcacttcttgaacttcgccttgttg
caggagggtgaggtgtactctgctgaccgtgaagacatgtattcctag
DBGET
integrated database retrieval system
