Rana temporaria (common frog): 120927719
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Entry
120927719 CDS
T07929
Symbol
SLC6A4
Name
(RefSeq) sodium-dependent serotonin transporter
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
120927719 (SLC6A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rtem02000
]
120927719 (SLC6A4)
Transporters [BR:
rtem02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
120927719 (SLC6A4)
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Gene cluster
GFIT
Motif
Pfam:
SNF
5HT_transport_N
Motif
Other DBs
NCBI-GeneID:
120927719
NCBI-ProteinID:
XP_040194503
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Position
2:457689783..457847674
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AA seq
664 aa
AA seq
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MERKPACAESPSSGSEKEPLTCKTRSECKKDGLLLRNCKPSLRLSEEHNKVHPCPGERAD
LGHMSNKYLAVQNPDAPCNGTRNGIDETSTPTLTVIPSCRAEVHHLQTEIAERETWSKKI
DFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLIPYVIMAVFGGIPLFYMELALGQYHRNG
CISVWRKICPLFKGIGYAICIIALYIASYYNTIMAWALYYLIFSFRSELPWTSCHNVWNT
ENCTNYFQNSSVTWINSSISPAEEFYTRLVLQIHKSKGLQDLGGISWQLSLCLLLIFTVV
YFSIWKGVKTSGKVVWVTATFPYIVLTLLLIRGATLPGAWRGVIFYLKPNWEKLLTTEVW
VDAAAQIFFSLGPGFGVLLAFASYNKFHNNCYQDAMVTSTVNCMTSFLSGFVIFTVLGYM
AEMRNLDVSEVAKDAGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGLDSTFAGLEGI
ITAVLDEFPHVWGKRRELFVLLLIVACYLGSLSTLTFGGAYMVKLFEEYATGPAVLTVVF
LEAIAVSWFYGINQFCRDIKEMLGFSPGWYWRICWVAICPLFLLFIICSFLSSPPELRLF
NYSYPGWSVVLGYCIGTSSFICVPVYMVYRIASTPGSLKERFIKSITPETITEMPVGGIH
MNAV
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggagagaaaaccagcctgcgctgagagcccatcctcgggttctgagaaagagcccttg
acatgcaagaccaggtcagaatgcaaaaaggatggtctgttgctgagaaactgcaagcca
tcactacgactgtctgaagagcacaacaaggtgcacccctgcccgggagagagggcagac
cttgggcacatgtctaataaatatttagcagtacagaatcctgatgccccttgtaatggc
accagaaatggaatagacgaaacctcaaccccaacacttactgttattccctcctgcaga
gctgaggtgcatcacttgcaaacagagatagcggaaagagagacttggagcaaaaaaata
gactttctcctatctgttattgggtatgcagtggatctgggcaatgtatggaggtttcct
tatatctgttaccaaaatggaggaggagcttttctcattccttatgtgattatggctgtg
tttggtggaattccgctgttttatatggagctggctctgggtcagtatcacaggaatggc
tgtatttctgtatggaggaaaatttgtccattatttaagggaattggttatgctatctgt
ataatagcactttatatagcatcttattacaacaccattatggcctgggctctctactac
ctcatattctctttccgatctgagctgccttggactagctgccacaatgtgtggaacaca
gaaaactgcaccaattatttccaaaacagcagtgtaacgtggataaacagctctatctct
ccagcagaggagttttacacccgactggtgcttcagatacataaatcaaaaggtctacag
gatcttggcggaatcagttggcagctctcgctctgtcttcttcttatcttcactgtagta
tattttagcatatggaagggagtcaagacatcaggaaaggttgtctgggttactgcaaca
tttccatacattgtacttacgctgcttcttatacgaggggccacgctgccgggtgcctgg
aggggagttatcttctacctgaagccaaactgggagaagctgcttactactgaggtttgg
gtggatgcagctgcacagatattcttctcgctgggcccaggattcggagtgttgctagcc
ttcgctagctacaataaatttcacaacaactgctaccaggatgcaatggtgacgagcact
gtgaactgcatgaccagttttttgtcaggttttgtcatattcactgtcttggggtatatg
gctgaaatgaggaacctagatgtctccgaagtggccaaagatgcaggccccagtctgcta
ttcatcacctatgcagaggctattgccaacatgccagcatccaccttctttgccattata
ttcttcctgatgttgattacactggggctggacagtacgtttgcaggtctggaagggatt
ataactgctgttctagatgagttcccacatgtatggggcaaacgtcgagaactttttgtc
ctccttttgattgtggcctgttaccttgggtctctttccaccttgacatttggtggtgct
tatatggtgaagctgtttgaggagtacgccactggcccagctgtgctaactgtagtattt
ctggaagccatagctgtgtcctggttttatggtatcaatcaattctgcagggatatcaag
gaaatgctaggcttttctcctggctggtactggaggatttgctgggtggcaatctgtcca
ctatttctcttgtttattatttgcagctttttgtcaagtcccccagaacttcgtcttttt
aattactcataccctggatggtctgttgtgcttggctactgcattggaacttcctctttc
atctgtgttccagtatacatggtataccggatagctagtactcctggatcgttaaaagag
cgcttcatcaagagcataaccccagagacgatcacagaaatgccagtgggtggtattcat
atgaatgctgtgtaa
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