Rana temporaria (common frog): 120927890
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Entry
120927890 CDS
T07929
Symbol
SCAF4
Name
(RefSeq) LOW QUALITY PROTEIN: SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120927890 (SCAF4)
03041 Spliceosome [BR:
rtem03041
]
120927890 (SCAF4)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120927890 (SCAF4)
Spliceosome [BR:
rtem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
120927890 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120927890
NCBI-ProteinID:
XP_040194802
LinkDB
All DBs
Position
2:complement(501705269..501834331)
Genome browser
AA seq
1444 aa
AA seq
DB search
MDAVNAFNQELFALMDMKPPISRAKMIMITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGIDKDVFGPRFTKNLTASFQCLYSCPEEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAVSGAPPELQADSSANEEGSSPPSMFFSTDPPEEPLVAAPAPTPAP
APPAPAPPAPAAPTVSAPALSVPQLPSSEAFAAVAQLFQSSQGQQLQQILQTFQQPPKPQ
SPVIEENIYSQVQSITCQMNTQPQQPHPQQPHQTDRKSTLDKLLDRFDYDDEPEAADEPK
KDVSSPTPPPPLQPPFPFPLETNQPPASFPQMPSQVPNMDLYQVVQPHMIGMPQESLHQI
PVPANGQMLGFGMFSAMVPPLSQESPQPFIQQPFPVQQNDIQSETDNQQEVSMDIEQPSL
QESKRPAERQRSVSRSPKRRRSRSNSRSRRSRHRRSRSRSRDRRRHSPKSRSQEKRDREK
ERERRMKGLPPIKADIVSVCSTTLWVGQLDKRTTQQDVEAFLEEFGPIESINMIPPRGCA
YIVMVHRMDAYRALQKLGRGNYKVNTKAIKIAWALNKGIKSEYKQYWDVEIGVTYIPWSK
IKPEELEALCEGGMLDNDTMSSEWKSITKKTEMADTSKNGSTAENAQNDNNSTGPQATPV
PLLSLQPVTGSQPVSSIPSLSTVPALQALQPGTVLSSLHGLHPLQGLHPPPQPLPIPPAL
PPLQAMHMPQGNYVPGFPGPFNIPPPGFAPGLPPPPFMRPGFNPMQMPPGFLPPPGMPPP
MTSMTPMAPMASMTPMASMTPMASMTPMAPMTPMAPMTPPVSLPPPMSGISIPTSTAGAP
TNEPDVAQGNILPFGTGTENIDSDDNGNGFGAAQQGGPNNASDPSNPLHDDSQGASSQGP
PTDSSTGPPQGPPGPPEASPNQPHGSSQGPTGSMQGPPHSAHGPSQGPPHSAHGPPQGPH
SAHGPPQGPHSAHGPPQGPHSAHGPPQGPPHSEHGPPQGPPHSEHGPPQGPRPGPPQGPQ
TGSYQGPPHGAPGPGLQSPSTGLLGARPGLIPLQRPPGVPPPNHMQRFPGMPHRQVPPHM
AHRGPPGPGGFGMPPPHGMRGPYPPQGPFGRGGPGGPEDREGRPFRNERRGFNPERGERH
GFNQERGDRHGFNLDRNDRHMFNPEPEEEFDVEMEEAPEFNPEMEEEEGFNPEMNEEQDF
NPDRQSFNPDRPGFRPDRPGFNPERPGFNPERPGFNPERPGFNPERPGFNPERPGFHPDR
NERQGFHPERERFGRRSFGNRNEDDREHFGGRFEDHERGVRGRRSWSRGSPERERHREPE
GRSRWSGGREREPRKPLLDFPDNRKPGMTENHEPPSAKIEPREPAPDTSKEKPKPEPKPK
SEPKPEPKSKPEPKPEPKPKPEPKSEPKPEPKPKPEPKSEPSEKKPTEDKKPKASSPAEK
TEKS
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtgaacgcctttaatcaggagctttttgcgctcatggacatgaagcctcca
atttctcgtgcaaaaatgatcatgatcacaaaggctgctataaaggcaataaagctttac
aaacatgtagtccaaatcgtggaaaaatttattaagaagtgtaaacctgaatacaaggtc
ccaggattgtatgtaattgattcaatagttcgtcagtctcgtcatcagtttggaattgat
aaagatgtatttggtccaagatttactaagaacctaacggcatctttccagtgtttgtat
tcctgtccagaggaagataagagtaaaattgtccgcgttttgaacttgtggcaaaaaaat
ggagtatttaaaattgagatcatacagccattactggatatggcagtgagtggcgcacca
cctgaattacaggcagattcgtccgctaatgaagaaggatcttcaccgccctctatgttt
ttttcaactgacccccctgaagagcccctggttgctgctcctgcacctactccagcacct
gcaccacctgcacctgcaccacctgcacctgcagcacccacagtatctgctcctgctctg
agtgttcctcagttaccaagctcagaggcttttgcagcagttgctcaattatttcaaagt
agccaagggcaacagcttcagcagattcttcagactttccaacaacctccgaagccacag
tcaccagttattgaagagaatatatattcccaagtacagtccattacttgtcaaatgaat
actcaaccacagcagcctcacccacagcagcctcaccagacagacaggaaaagtaccctt
gataagttgctggacagatttgattatgacgatgaacctgaagccgctgatgagccaaag
aaagatgtgtccagtcccactcctcctccacctctacagcctccattcccatttccctta
gagacaaaccagcctcctgcatcattcccacagatgccaagtcaagtgccaaacatggac
ctgtatcaggttgtacagccacacatgattggaatgcctcaggagtctcttcatcagatt
ccggttcctgcaaatgggcaaatgcttggttttggtatgttctccgcaatggttccacca
ttgtctcaagagtctccacaaccttttatccagcagcctttcccagttcaacaaaatgat
atacagtcagaaacagataatcagcaggaggtgtccatggatatagagcaaccttctctt
caggaatcaaaacgccctgcagaacgtcagagatcagtttccagatcaccaaaaaggaga
cgttcccgatccaattcacgctctcgcagatccaggcacagacgttctcgttctaggtcc
cgtgataggcgccgccattctcctaaatctcgctctcaggagaagcgtgaccgagagaag
gaaagggagcgcagaatgaaaggtcttccgcctatcaaagctgatatagttagtgtttgc
agtactactctttgggttgggcagctggacaaaagaaccacccagcaagatgttgaagcc
tttttagaagaatttggacccattgaatcgatcaatatgatacccccaagaggctgtgcg
tacattgtaatggttcacagaatggatgcatatcgtgctttacaaaaactgggcagagga
aactacaaagtaaacacaaaggcaataaagattgcatgggctttaaacaaaggaattaaa
tcagagtataagcagtactgggatgtagagatcggtgttacgtacataccatggagtaaa
atcaaacctgaggagctggaggcattgtgtgaaggagggatgttggataatgatacaatg
agctcagaatggaaaagtatcactaaaaagacagagatggcagacacatccaaaaatggg
tctacagctgagaatgctcaaaatgataacaattcaactggacctcaggctacccctgta
cctctgctctctcttcagcctgttacaggtagtcagcctgtgtcatccattccatccctt
tcgacagtaccagcacttcaggctcttcagcctggtacagtgttatcttctcttcatggt
ttacatcctttgcagggattacacccacctcctcaaccactgcctattccaccagcactg
ccaccattacaagcaatgcatatgccacagggaaattatgttccaggattcccaggaccc
tttaatatacctcctcctgggtttgctcctggtcttcctccacctccatttatgaggcca
gggtttaatccaatgcagatgccaccaggatttctacctccgccgggtatgccccctcct
atgacttctatgacacctatggctcccatggcttctatgactcccatggcttctatgact
cccatggcttctatgactcccatggctcctatgactcccatggctcctatgactcctcca
gtgtctcttcctcctcctatgtctggaataagcatcccaacttctactgcaggtgctcca
actaatgaaccagatgtagctcaaggaaatatattaccttttgggactggaactgaaaat
attgattctgatgataatggaaacggatttggggccgctcaacaaggagggccaaataat
gcttctgatccatcgaacccacttcacgatgattcacaaggtgcttcatcccaaggacct
ccgacagatagttctacaggcccaccccagggtcctcctggcccacctgaagcttctcca
aaccagccacacggctcatcacaggggcctacaggttcaatgcaaggtcctccacactct
gcacatggtccatctcaaggtcctccacactctgcgcatggtccacctcaaggtccacac
tctgcgcatggtccacctcaaggtccacactctgcgcatggtccacctcaaggtccacac
tctgcgcatggtccacctcaaggtcctccacactctgagcatggtccccctcaaggtcca
ccacactctgagcatggtccacctcaaggcccccgtccaggaccacctcaaggaccccaa
acagggtcataccaggggcctccacatggagcacctggtcctggtttgcaaagcccttca
acaggccttctaggggctagacctggattaataccacttcaaagaccacctggagttccc
ccaccaaatcacatgcaaagattccctggaatgccacaccgccaagtgccgcctcatatg
gcacacagaggtcctcctgggccgggtggttttggaatgccaccacctcatggtatgaga
ggcccttatccaccacagggtccttttggaagaggaggaccaggtggccctgaagatcga
gaaggcaggccatttagaaacgaaagacgtgggtttaatccagaacgtggtgaaaggcat
gggtttaatcaagaaagaggtgacagacatgggtttaaccttgaccgaaatgatcggcat
atgtttaatcctgagccagaggaggaatttgatgtggaaatggaggaggcacctgaattt
aaccctgagatggaagaggaggaaggatttaatcctgagatgaatgaggaacaagatttc
aaccctgacagacaaagtttcaatcctgataggccaggtttccgtcctgacaggccaggc
tttaatccagaaaggccaggctttaatccagaaaggccaggttttaatcctgaaaggcca
ggctttaatcctgaaaggccaggctttaatcctgaaaggccaggcttccatccagatagg
aatgaaaggcaaggctttcatcctgaaagagaacgattcggaagaaggtcttttggaaat
cgtaatgaagatgatcgagaacacttcggtggccgctttgaagaccatgagaggggagtc
cgtggaagaagaagctggagccggggaagtccagaacgtgaaagacatagggaacctgaa
gggaggagcaggtggtctgggggacgagaaagggaacctcgcaaacctcttctagatttc
cccgataatcgtaaacctggtatgaccgaaaaccacgagcctccaagcgctaaaattgaa
cccagagagcctgctcctgacaccagcaaggaaaaacctaagcctgaacctaaacctaaa
tctgaacctaaacctgaacctaaatctaaacctgaacctaaacctgagcctaaacctaaa
cctgagcctaaatctgaacctaaacctgaacctaaacctaaacctgaacctaaatctgaa
ccttctgagaaaaaacccactgaagacaagaaacctaaagcatcatcaccggctgaaaaa
acagaaaaatcctaa
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