Rana temporaria (common frog): 120928756
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Entry
120928756 CDS
T07929
Symbol
NUP98
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120928756 (NUP98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120928756 (NUP98)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120928756 (NUP98)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120928756 (NUP98)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120928756 (NUP98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
120928756
NCBI-ProteinID:
XP_040195679
LinkDB
All DBs
Position
2:272524..336217
Genome browser
AA seq
1782 aa
AA seq
DB search
MFNKSFTSPFGGGTGAFGATSTFGQNAGFGTTQATGFGTTTTAFGAANSGGLFGTTQNKP
GGLFGTTTFNQPATSTTTSAFGFGAATGTPNSLFGSTNTGAGGLFSSQQQQSNAFGQTKP
STFGTFGTSTSSGGLFGNTNTTSNPFGGTTSNLFGGSTFSAAPTGTTIKFNPPSGTDTMA
KGGVTTNINTKHQCITAMKEYESKSLEELRLEDYLANRKGPQNPVGAAAATGLFGASTAT
PSAATGLFGSTPSSSTFSFGSKTAFGQGTNTFGANTGGLFGQPAAQPTTSLFNKPFGTAT
TTPNTAFSFGNANTLGQPQTSTMGLFGSTQPTQAAGLFGTTTNTNAASGFGTGTGLFGQT
NATPFGGVTGSTLFNSKPAAFGATTTSAPTFGTSTGGLFGFGTNTAGTSIFGNKNAAGTL
GPALGTGFGPGLNTGQSTLFGNNQQKIGQLGTGAFGTTAFNTAGGGLGFGGAQAPVALSD
PNAAAAQQLALQQQINALAYSPYGDSPLFRNLIDDPKKKEERLKPTNPAAQKALTTPTHY
KLTPRPAARVRPKALSTAGTAKSQLFDGLDDDEPPMTGGTFMPKKSIKKLVLKSSSNISS
LLSPSNADSADEVNSPNSYNENGDRSNENHRVEENHEEEVSTFYPPPLSKPLLPSSQDKH
MDSMDDTILALNMRPSLRSSGLDVSVDENSLNEEEIMNDVPPHPAGIVLNREGYYTIPSM
EDLGNMVDDNGECIVDGFTIGRKGYGSIFFEGLVNVTNMNLDEIVHIRNKEVIVYTDDAN
KPPVGEGLNRAAEVTLNEVWPINKTTRELIKSPEQLAEMNYKSKLEAASRKQGAQFKEYR
PETGSWVFRVKHFSKYGLQDSDDEDDGSASTAENKKIKSATLPPPGQQAPPPAQASLNGK
HSPPPQGSMAELLGGHALALDSDMVDVTQETFKETAMEDLEVPEEQESLSASIHIASSLG
VNPHALQVMKASLLMDEDGVTDILSPYGHYPSLLETSQDGRSPRLLHPSSQAQRTSSVGG
LLQSRFTGSSLLKQSESGQSPRSSSSASKGAPWPGLGLLAPSFLMPSPAPEIQLKTVGTQ
RQQGLVPSKKSVCTGRGRMLIDMGLFMGRSFRVGWGPNWTLAHNGKVISESSMVKKTDKL
GNLDYGFLPKPVTAKSLMESPFKVHLEKLSLEEKGKDLQSYLIPLEIELKNSTIKPEQCP
LLVPNPGFAAIHDYAGWVSEECQEPSEMEAVVKQWCLTWTMCKALWGQLRDLEASLDETN
QYVERLQRRKAFSHWLAETAVDRIESEVVMHQKERPIEAVFSYLTGCRISEACRLAQKSG
DHRLSMMLSQLVGSQQLQELLRMQLEDWQKQQVDRFIQEERLKVYVLLSGTAVWQSSDKK
SINVCSQLDWKRALAVHLWYMLPPTAPIAQALQKYEEAFQVSNEGQCYASYPLPSYLENA
DLAMESETSPPPMQRDVCFHLLKLYSDRSYDLRQLLDPRSITSDPLDYRLSWHLWMVLQA
LNYTHLSAQSQGVLHTSYAAQLENVGLWEWAVFVILHIPDPVVRELAVRELLIRHCVLRE
TPESLMKEKFLVEKLCIPAQWIHEAKAIRSRREGDQHKEATYLLRAGHWNQCHRLVSRHL
ASDAIINENYSYLHSFLDELSRPENCVHIQGWDTAGQVCLDYITIIEMLNSIRQSECSVY
ELERLHNKVISVCNRVEQIQCYKSKDRLAQSEMAKRVANILRVVLRLQHSPESDDSSADL
QRVPLRLLAPHIGRLPMPEDYAMEELRSLTQSYLRELTLRSQ
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaatcgttcacctcgccgttcggcggaggcactggagctttcggagccacg
tctacctttggacaaaatgctggatttggcacaacgcaggcgactggatttgggacgacg
acgacggcatttggagcggctaacagcggcggattgtttggaaccacccagaacaaacca
ggtggactgtttgggaccacgacgttcaaccagccggcaacctccaccaccacctccgcc
ttcggtttcggagctgcgaccggtacgccaaactccttgtttgggtctacgaatactgga
gcagggggtctcttctcatcccagcagcagcagagcaatgcctttggacagacaaagcct
tcgacttttggcaccttcgggacgagtacaagcagtggaggtctcttcggaaataccaac
accacctccaacccctttggtgggaccaccagtaacctgtttggtggttccaccttctct
gcagctcccactggaaccaccataaaattcaatccgccatctgggactgacaccatggcc
aagggcggtgttaccaccaacatcaacacaaagcatcaatgtataacggcaatgaaggag
tatgaaagcaagtctctggaggaactgcgtctggaagattacctggccaataggaagggc
ccccaaaatccagtgggcgcagccgcagcaacgggcttgtttggagcctcaactgccact
cccagtgcggccacaggactgtttggctccaccccttccagcagcaccttctcctttgga
agtaaaactgcctttggacagggcaccaacacttttggagccaacacgggaggtctgttt
ggccagccggctgcccagccgaccaccagcctgtttaacaagccatttggaacggcgact
acaacacccaacacagccttctcattcgggaacgccaacactctggggcagccccagacc
agcaccatgggtctctttggcagcacgcagcccacacaggccgcaggactgtttggtacc
accactaacaccaacgccgcctctggctttggcacaggaaccggtctgttcggacagacg
aatgccactcccttcggaggcgttaccggctcgaccttattcaacagcaaacctgccgcc
ttcggggcgacgaccaccagcgcaccgacgttcggtacttctaccggcggcctttttggg
tttggaaccaacaccgcgggcaccagtatttttggcaataaaaacgcagcgggtacgctg
gggccggcgctggggacaggatttgggcctggtctgaatacgggacagagcacactgttt
ggaaacaaccagcagaagatcggtcagctcggtaccggcgcatttggcacaaccgcgttt
aatactgctggaggcggcttaggatttggtggtgctcaggcccctgtggctctgagtgac
cccaatgcagcggctgcccagcaattggctctccagcaacagatcaatgccctggcctac
tctccatatggggactcccctctcttcagaaatctcatcgatgaccccaagaagaaagag
gagcgtctgaagcccaccaacccggccgcccagaaagcgctgaccacgcccacgcattac
aagctgacccctcgtccagcggccagggtgcgccccaaagcgctgagcacagcagggacc
gctaagtcgcagctcttcgatgggttggacgatgacgaaccgccaatgacaggcggaact
ttcatgccaaagaagagcatcaagaagctggtcctgaagagctcctccaacatcagctcc
ctcttatctccttccaatgccgattcagccgatgaggtgaactcccccaacagctacaat
gaaaacggagacaggtccaatgaaaatcacagagtggaagagaaccacgaagaggaggtg
tccacgttctaccctcctccattatccaaacctctcctcccctccagccaggacaagcat
atggacagcatggatgacaccatcttggccctgaacatgaggcccagcctgaggagcagc
gggctggacgtcagcgtggatgagaactccctgaacgaggaggagatcatgaatgacgtc
ccaccacaccctgcaggcatcgttctgaacagagaaggttactacaccatcccgtccatg
gaggacctgggcaacatggtggacgacaacggagagtgcattgtagatggcttcaccatc
ggccgaaaaggctacgggtccattttctttgagggactggtgaacgtgactaacatgaac
ctggatgaaatagtccatatccggaataaggaggtgatcgtgtacaccgatgacgcaaac
aagccgccagtgggagaaggcctgaacagggctgctgaagtgaccctgaatgaagtctgg
ccaatcaataagaccacccgagagctgattaagagccctgagcaactggctgagatgaac
tacaaaagcaagctagaggcagcttcccgcaagcagggagcccagttcaaggaataccgt
cccgagaccgggtcctgggtgttcagggtgaagcatttctcgaagtacggcctgcaggac
tcagacgatgaagacgacgggtcggcttctacagcagagaacaagaagataaaatccgcg
actctcccgccacctggacaacaagctccgcccccagcgcaggccagcctgaatggaaag
cacagtcctccaccacagggctcgatggcggaactgttgggaggacacgctctggcgctg
gacagtgacatggtggatgtgactcaggagacgttcaaggaaacggccatggaagatctg
gaggttccagaggagcaggaatcgctctctgcctccatacacatcgcctcttctctcggg
gtgaaccctcatgctttgcaggtgatgaaggcgtctcttctgatggatgaagatggtgtg
acggatatcttatctccttatggccactacccgtccttgctggagacctcacaggatggg
cgctccccccgactcctccacccctcctctcaggctcagcggacctccagtgttggaggt
ctcctgcagtcccgcttcaccggatcctcgttactcaagcagagtgagtctggtcaaagt
cctcgttcatcttcatcggcctccaagggggccccgtggcccggcctgggcctcctagcc
ccctctttcttgatgccatctcctgccccagaaatacagctgaagactgtggggacacaa
aggcagcaaggtctggtaccctccaagaagtccgtgtgcactggccggggcaggatgttg
attgacatgggcctgtttatgggacggtcgttccgggttggttgggggcccaactggact
ttggctcacaacgggaaggtcatcagcgagtccagcatggtgaagaaaaccgacaaactt
gggaatctggactatggatttctgcccaaaccagtcactgccaaatcacttatggaatct
ccgtttaaagtccatctggagaagctgagtttagaggagaaggggaaggatcttcagtct
tatctgatcccgctggagattgagcttaagaacagcaccataaagcctgagcagtgtcct
ctcctcgtacccaaccctggctttgctgccattcatgactatgccggatgggtcagtgaa
gagtgtcaggagccttcagagatggaagctgtggtaaaacagtggtgcctaacgtggacc
atgtgcaaggcattgtggggccagctgcgggacctggaggccagcctagatgaaaccaac
cagtatgtggagagattgcagcgcaggaaggccttctcccattggttggctgagacggcg
gttgatcgcattgagtcggaggtggtgatgcaccaaaaggaacgtcccatcgaggccgtc
ttcagctacctgaccggctgccgcatcagtgaggcgtgtcgcctggcacagaaatctggg
gaccatcggctctctatgatgttgtcacagttggtgggcagtcagcagctacaggaactg
ttgcgtatgcagctggaggactggcagaagcagcaggtggaccgcttcatccaggaggag
aggctgaaggtctatgtgctcttatctggcactgcggtatggcaatcttctgataagaaa
tccatcaacgtctgctcacaactggactggaagcgagcgctggctgttcacctctggtac
atgctcccgcctaccgcccccatcgcccaggcactacagaaatacgaggaggcttttcag
gtgtcgaatgagggacagtgctatgcatcctatcctctgccttcatacctggagaacgct
gaccttgctatggagtctgaaacctccccaccacctatgcagagagacgtctgcttccac
cttctgaagctgtacagtgacagatcttacgacctccgccagctcttggacccccgaagt
atcacctctgaccccttggactatcgtctcagttggcacctctggatggtactacaggcc
ttaaattacacccacctgtcggcgcagagccagggagtgctgcacaccagctatgccgct
caactggagaatgtggggctgtgggagtgggccgtcttcgtcatccttcacatacctgac
cctgttgttcgggagttggctgtgcgagagctcctgatccgacactgcgtcctgcgggag
actccggagtcgctgatgaaggagaagttcctggttgagaagctctgcatcccggcacaa
tggatccacgaggccaaagccatccgttccagaagagaaggagaccaacacaaagaggcc
acctacctcctgagagctggccactggaaccaatgtcaccggctggtctcccgccatctg
gcttcagatgccatcataaatgaaaattactcctacctacacagctttttagatgaattg
tcccgtcctgagaactgcgtccacatccaggggtgggacacggcaggacaggtctgcttg
gattacatcactatcatagagatgctgaacagtatccggcagagtgaatgttcggtgtat
gagttggagaggttacacaataaagtcatctccgtctgtaaccgggtggagcaaatccaa
tgctacaaatccaaagacaggttggctcagtccgaaatggcgaaacgcgttgccaacatc
ctccgcgtcgtccttcgtttacagcattcaccagaatctgacgactcctccgccgacctc
cagcgagtccccctcagacttctcgccccccacatcggccgactccccatgccagaggac
tatgctatggaagaactccgcagtctcacgcagtcttacttgagagaactgactttgcgc
agccagtag
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integrated database retrieval system
