Rana temporaria (common frog): 120928871
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Entry
120928871 CDS
T07929
Symbol
TAF1C
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120928871 (TAF1C)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
120928871 (TAF1C)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
120928871
NCBI-ProteinID:
XP_040195866
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All DBs
Position
2:18236018..18285179
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AA seq
1080 aa
AA seq
DB search
MEHPHVLFPRFHHEGPIVQQSSRFVPTPLGWGGYGSIQEDVRDPGQRRFIPLYSRRAERW
ETIEPTPVPLLRPNTDCGFSPVTEYDLIHRKLKKAENTNPGIAGVSLNFSKQMGRFCWDQ
SGIAFQSMGRLLEPHLYLGEKPPRGVAKDQTKMTDMLQRLQNAPYHECPYPYSSYPIRGL
SFLTGDWLQDVPPALLAQLVDDGMADEWKQLQFQESLTGGALSWAPYPGGSGGCLIYPRG
AVMNQLHFQQILMKPPRVKIKGKPAVCDLQQRVQQISTGEFDDIFVGVRSTYNLATWSFS
ADDPPRPLGVVRTKTPSTCLNVSPHLPGELCVCTESGTLYLWNLERGLQRIRQDEQTLFF
RDDSHWRWSDFTSHPRVLLYADRTGVQAADVRVEGGQGLDLFRIGQESSSQRGERVILSR
CLRETEPAHFLVTTQFSVYIMDDRFPLVPLAKWTHMLERPPAFVSVIPGGQTERTNKILL
GTQHSQERVLLQYSGGDMNPCQLHLPAVRLPQNSESLHHLDPLQPHQREIVAQRLGSPMA
GLAAACTVLNPEFLVLFHLTEAGDVFTQQLAYKRSLAPSSNHFSGGNPSCTVERTVANDT
PTEQISEAVTIELDTSGQDPESGPNLGAVERSPETVSTNGIHATSPIYEVMSSSPPSFST
KSKLSFSKWIHRVLNICKGSVEELQRPGCKINKLFRAEELRETPQEVDRLRDCLRQGMRT
GKLIKLGSTTRSETVELVRAESWKDPLSQRLTAAWEGRLKQLWDDHKGLNKVSKMQALRE
KRRRQKLQRAQSQSSLTGSLLSSLSFRSDVYETEASSPWSYDSAPVADVDTSVYSAVSEK
QGNAVSLDQISNCSFQSGPSTRSDLFRVRLAQANLNVSDSKLSETCPIISSQSLRSKGIP
KERRRTLQEFMSRDPPTSVPTQIFQETALSQNSQTPPWSSQTLPTDTEMQTCSKLPPGTT
FSQSSQTLSQSLQRQTSPQRSQTLSTATRMQTSSQLSQGMTSSQGLQTPVQPQTPSRYSQ
TQTLSTRTGMLTRSQLSQGTTFSQSSQFLSQSLQPQTSSQRSATQTRLQQPPAKKFRMGF
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggagcacccgcatgtcctcttccccaggtttcaccatgaaggtcctattgtccagcaa
tcatccagatttgtgcccacccccctggggtggggaggatatggaagcattcaggaagat
gtcagggatcccgggcagaggcggtttatccccctgtacagcagaagagcggagagatgg
gagaccatcgagccaacgccggtcccacttctacgccccaacaccgattgcggcttctca
ccagtgacagaatatgacctgattcataggaagctgaagaaagcggaaaacaccaacccc
ggaattgccggagtgtccctcaatttcagcaagcagatgggcaggttctgctgggatcag
agcggcatcgctttccagagtatgggacgtctgctggagccgcacctctacctgggagag
aagcccccgaggggagtcgcaaaagaccaaactaaaatgacagatatgctgcagagacta
cagaacgcgccgtaccacgaatgtccctacccatacagcagctaccccatacgaggcctc
tccttcctcactggcgattggctgcaggatgtaccgcccgcattgctggctcagctggtc
gacgatggcatggccgatgaatggaagcagctgcaattccaggagtctctgacagggggc
gctctgtcctgggcgccatacccgggtggttctggaggttgcctcatctatcctcgtggg
gccgttatgaaccagctccactttcagcagatactcatgaagccccccagagtgaagatt
aaaggaaagccggccgtgtgcgacctccagcagagggtccaacaaataagcactggggag
tttgatgacatttttgtcggtgttcgatctacatataatttggccacatggagtttttca
gctgatgatccccccagacctcttggtgttgtgagaacgaagactcccagcacctgcctc
aatgtcagccctcacctgcctggtgaactctgtgtctgtacggaaagtgggacattgtac
ctgtggaacttggagcggggattgcagcgaatccgtcaggatgaacaaacccttttcttc
cgcgatgactctcactggagatggagtgacttcacctcccaccctcgtgtcctcctgtat
gctgaccgcactggagtgcaggctgcagacgttcgggtggaaggtggtcagggcctggac
ttgtttcgtatcggtcaggagtcgtcatcccagagaggagagagggtgatcttatcccgc
tgtctgagggagacggaaccggctcacttcctggtgaccacacagttctctgtttacatc
atggacgaccgattccctctggtaccgctggctaaatggacgcacatgctggagaggccg
cctgcgtttgtcagcgtcattccaggaggtcagactgagaggaccaacaagatccttctg
ggaacccagcacagccaggagagggtgctgctgcagtactcaggaggtgatatgaaccct
tgccaactgcacctacccgcagtgagactcccacagaattcagagtccctccatcatctg
gatccattacagccccatcaaagggagattgtggcacagagactgggatctccgatggca
ggattggctgccgcatgcaccgttcttaatccagaattcctggtgcttttccatctgaca
gaggctggtgatgtctttactcagcagttggcatacaagaggtctctggctccgagctcc
aaccatttttccggagggaatccaagttgtacagtcgagaggacagtggctaatgacacc
ccaacagagcagatttcagaagctgtcaccattgaattagacacttctggccaagatcca
gaaagtggaccaaacctgggagctgtagaacgttctcctgaaactgtctccaccaatgga
attcacgccacgagtcctatctacgaggtaatgtctagttctccaccttcgttcagcacc
aagtctaaactttccttcagcaagtggatccatcgtgtactcaatatctgcaaaggaagc
gtagaggagctccagcgtccgggatgcaagattaacaagttgttccgtgcagaagagtta
cgggaaactcctcaggaggtagatcgattgcgagattgcttacgtcaaggtatgagaacg
ggcaaactcataaaattgggctccacgaccaggtctgagacggtggagcttgtgcgcgcc
gagagctggaaagacccattaagccagaggcttaccgcagcttgggagggacggcttaaa
cagttgtgggacgaccacaaaggcctgaataaggtcagcaagatgcaggctcttcgagag
aagagacgaagacaaaagctgcagagggctcaaagccaaagctccttaacaggaagtctt
ttgtcctctcttagtttccgttctgatgtttacgagacagaagccagttccccgtggtct
tacgatagtgccccggtggcagacgtggacacgtcggtctattctgctgtcagtgaaaag
caaggtaatgcggtctctcttgaccaaatttctaactgtagtttccagtcggggccttca
acaaggtcagacctcttccgtgttagactggcacaagccaacttaaatgtaagtgactca
aagttatcagaaacttgtcctatcatctcctcacagtccctgcgctctaaggggatccct
aaagagaggaggaggacgctgcaagaattcatgagcagagacccgccaaccagcgttcct
acacagatatttcaggagacagccctgtcccagaactcacagacccccccgtggtcctca
caaactctcccaacggacactgagatgcaaacttgctcaaagctccctccagggacaacc
ttctctcagagttcccagaccctctcgcaaagcttgcagcgacagacctctccacagcgg
tctcagactctctcaacagccactaggatgcaaaccagctcacagctctctcaggggatg
acctcatctcagggcttgcagacccctgtccagccacagaccccttcacggtactcacag
actcaaactctctcaacgcgcactgggatgctaacccgctcacagctctctcaggggaca
accttctctcagagttcccagttcctctcacaaagcctccagccacagacttcctcacag
cgctcagcaacgcaaacccgtttgcagcagccaccagctaaaaagtttcgtatggggttc
taa
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