Rana temporaria (common frog): 120928905
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Entry
120928905 CDS
T07929
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120928905 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120928905 (PCF11)
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120928905 (PCF11)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120928905 (PCF11)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120928905 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
120928905
NCBI-ProteinID:
XP_040195906
LinkDB
All DBs
Position
2:25671336..25706388
Genome browser
AA seq
1773 aa
AA seq
DB search
MAGDEAREDACREYQSSLEDLTFNSKPHINMLTILAEENLQFAKDIVTLIEAQIAKAPSS
EKLPVMYLMDSIVKNVGRDYVAAFAKNIVATFVIVFDKVDENTRKSLYKLRSTWEDIFTS
KKLYALDVRVNQVDPAWPVKPLPPNVNTASIHVNPKFLNKPEEPTTPVIAVPKPVPSRTL
KPEVPKSHLSQEQLIRQQLLMKQKQLLELQQKKLELELEQTKAQLASSVPAKPNVPEIPH
MPAKAVHPTSTTHSEKNKIPVPSQSDKAPASTRDPRLNRGNQHSSHTKEPHKKETKTNTP
APPDSKPLKPVPSDKPSLSKPEKNKPAEKLPKKESVPLDLKSKSKSPLPLIPKLPHAKDG
KAPVADGTRDSGTRDSDVNRRDPRLRKHSRDKSSDDKPEEIKEKRKSTEKKEDHKSSEHR
PSGNRTKTVNGILPKNDLGANDPDKLIQKPGRSSNRKRSRSRSPKSRRDRRSPLKRRQRS
QSPPVPQRSRSPIPPVLKNSKLRQPGSKPPHTSDFSSSARDDRLKRIPKLDPRDSRRQKR
PSEERQKRPSEERQKRPSEERQKRPSEERQKRPSEERQQDAPTPLFSKTGSEPKENVENW
QGSKIGKRWRPGWEENKTSPNDDHHHGNRTPYPRHRDSWPNSKGILSPRTPKQQPWLSVD
PNLQIPKELTSASKGELLQRANERLTSGEITHDEFLVVAHQIKQLFQYQEDKQRCVFSSP
TEESSSSGVRKKPLLSNAELTYYQHKARLRRTQVQHFMDQDFMDFPMDEMSSIDGESEHN
DRIPSSLSERNQQFPERVRRPSMPGTLLLEEDLPHDLDQELPKGLRDESQTLYSEQYTLE
RLRLDEKEQASLLDSLDSLSNESSKHVGLLEERRLPPLHDLPPLHDLPPLHDLPSLLPNR
GEDAGSQGFEDMDIMDSRESSPVKRFDGPLANQAGGQLFENLKGQPMDFDPMGSNLVDTP
RFDNISGQPNNTQSQTLQRFEGVQNQMVNSQMCSQRIESSPGPPLVPTRFDGPQGQQLGS
QMFDGIPGQPIGPPRFDGVQPVGPQRFEGGLGPGPQRFDDPQRFDGGPAPQNFDGPQRFD
GAQRFDGPQRFDGVGPQRFDGPQRFDGNSGPQRFDGPHRFEGPPRPQLLQQRFEGPPQGP
HMRFEQPMSQPVMFDGAGQPMGNVRFEVPHGPRFDGPPGPRFDGPHGPRFDGPHGPRFDG
PPGTRFDCPPQGPRFSASQGPRFDHGPGPQGLMRFDGPMGQAGPRFDNVPVNRFDNHPPH
LPRYDGVPGQPCTRFDAPPGHQTPPRFDGPVHMQPRFDAPMPQRFDGPNQQPRFDMPLGP
QGQRFENMNPPIGQNPPPIGQTPPPPFVQTAPFDPQNVFHGQSQGMPFQRPEQRYDLPQG
PRFTGPPAPGMQMFPNQLPRPSGPYFDDKNPQAPPFGNFNLPVASMQQNPPFSTMAQPQP
TPFNPESMMGTTQAPNQGSFIIPPQPAAAFPNPENHLCQLDVNELFSKLLSTGILKGAKS
EPSSSQTETPSQPATEEEEEEPVEEHDIPDLTSFVLEDMKQRFDCVITRLYTGIQCYSCG
MRFTKSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQ
FFEKVHEEVILKTQEAAKEKEFQSVPAGPAGADEICEICQEQFEQYWDEEEEEWHLKNAM
RVNDKIYHPSCFEDYKNTSSFLDSTPSPSKALLENPLSAMLSLVKEEATDTTEIALTVKE
EPTEDRPCSKGETIPLLTEIKLEPTDPEQKPLP
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggacgaggcccgagaagacgcctgccgggagtaccagtcgtccttggaggat
ctgaccttcaacagcaagccgcacatcaacatgctcaccatcctggccgaggagaacttg
cagttcgccaaggatatcgtcactcttatcgaagcgcaaatcgctaaggcacctagctca
gagaagcttccagtcatgtatcttatggattccattgttaaaaatgttggaagagactac
gttgctgcgtttgctaaaaacatagttgccacgtttgttattgtgttcgacaaggtggat
gaaaacactagaaaaagtttgtataagttacgttccacatgggaagacatttttacttca
aagaaactctatgcacttgatgtgagggtcaaccaggtagacccagcatggcctgtcaag
cctttaccccctaatgtgaacacagctagtatccatgtgaatcctaaattcctgaacaaa
ccagaggagcctactacacctgttatagcggtgccaaaacctgtcccgtctcgcactttg
aaacctgaggtaccaaagtctcatctttcacaagaacagcttataaggcagcagttgctt
atgaagcaaaaacagttgttagaacttcagcagaagaagttggagttagaattagagcag
actaaagcacaactggctagttcagtacctgcaaaacctaatgtcccagaaattccacac
atgcctgctaaggctgtgcacccaacctctactacacattctgagaagaacaaaattcct
gtaccctcccagtctgacaaggctcccgcgtcaaccagagaccctagacttaacagggga
aaccagcattcatcacacacaaaagaaccccataaaaaggaaaccaagaccaatacacct
gcaccaccagactctaaacccctaaaacctgtgccatcagacaaacctagcttgtctaag
ccagaaaaaaataagccagcagaaaagttacccaagaaggaatctgtacccttggacctt
aaatctaagtccaaatcacctttaccgttgatacctaagttaccccatgcaaaagatggg
aaggcacctgttgccgatggcaccagagattctggtacaagagactctgatgtaaataga
agggatccgaggttacgcaagcactcgagagacaaatcatctgatgataaaccagaagaa
attaaggaaaaacgaaaaagcacagagaaaaaggaggaccacaaatcctctgagcatcga
ccatctggaaataggactaagactgtaaatggtatattgccgaaaaacgatttgggtgca
aatgacccggacaaacttatccaaaaacctgggagaagtagtaaccgaaaaaggtcccga
tcacgttctcctaagtccaggagagacagacgatctccgttaaagagaagacaaagaagc
caatctcctccagttcctcaaagaagccgctctcctattcctcctgtcctcaaaaacagc
aagctgcgtcaacctggaagtaaaccacctcatacgagtgacttctcatcaagtgcaaga
gatgacagacttaaaaggattccgaaattggatcctagagatagcaggaggcagaagaga
ccctcagaggagaggcagaagagaccctcagaggagaggcagaagagaccctcagaggag
aggcagaagagaccctcagaggagaggcagaagagaccctcagaggaaaggcagcaagat
gcaccaacaccgctgtttagtaaaactggttcagaaccaaaagaaaacgtggagaactgg
caagggtctaagatcgggaaaagatggcgacctggatgggaggaaaacaagacttctccg
aatgatgatcaccaccatggcaatagaactccttatccaagacatcgggacagctggcct
aatagtaaaggaatactttccccccgcactcccaagcaacaaccgtggctaagtgtggat
cctaacctacaaatcccaaaagaattaacaagtgcaagcaaaggagaactgcttcagagg
gctaatgaacgcttgacatctggagaaattacacatgatgaattccttgtcgttgcgcat
caaatcaagcagctttttcagtaccaagaggataagcagagatgtgtgtttagcagtccc
acagaagaatccagcagcagtggagtgcgaaaaaagccacttctttcgaatgcagaattg
acgtattaccagcataaagctaggttaaggagaactcaggtacagcattttatggatcaa
gactttatggattttcccatggatgaaatgtcctctattgatggagaaagtgagcacaat
gacagaatacccagtagcttgtctgaaagaaaccagcagttccctgaaagagtgcgtcgt
ccttctatgcctggaactctactccttgaggaagacctcccacatgaccttgatcaagaa
ctgcccaaaggtttaagagatgagtcgcagaccttatacagtgaacaatatactcttgaa
cgactcagattagatgaaaaagagcaggcgtctttgttagacagtttagactcgctcagc
aatgagagctcaaaacatgttggcttacttgaggagagaagattgccaccactgcatgac
ctgccaccactgcatgacctgccaccactgcatgacctgccgtcgctgttgcctaataga
ggtgaagatgctggcagtcagggttttgaagacatggacattatggacagtagagagagc
tcaccagtcaagagatttgatggtcctttagccaatcaagctggaggtcaacttttcgaa
aacctgaaaggacaaccgatggactttgatcccatgggaagcaatttagtcgacactcca
aggtttgacaatatttctggacagccaaataacacacaaagccagacattgcaaagattt
gaaggtgtacaaaatcaaatggttaattcacaaatgtgtagtcaaagaatagagtcttct
ccaggtccacctctagttccaacaagatttgatggaccacaaggacagcagttgggatct
cagatgtttgatgggattcctggacaacccataggtccaccacgatttgatggagtgcag
ccagtgggacctcagcggtttgaaggtggtttaggaccaggaccacaaaggtttgatgac
ccacagagatttgatggcgggcctgcaccacaaaattttgatggacctcaaagatttgac
ggtgcacagagatttgatggacctcagagattcgatggagtaggcccacaaagatttgat
gggccccaaaggtttgatggtaattcagggcctcaaaggtttgatggacctcatagattt
gaaggaccacctagaccgcagctactccagcagaggtttgagggtccaccacagggtcct
cacatgagatttgagcaaccaatgtctcagccagttatgtttgacggtgctggacaacca
atgggcaatgtgaggtttgaagttccacatggtccacggtttgatggtcctccaggtcct
agattcgacggaccgcatggtcctaggtttgatggaccacatggtcctaggtttgatggg
ccaccaggtacaaggtttgactgtcctccacagggtccacgattttctgcaagtcaaggt
cccaggtttgatcatggtcctggcccacaaggtttaatgagatttgatggccctatggga
caggctgggcccagatttgacaatgttcctgtaaacagatttgacaatcaccctccccat
ttgccaaggtatgacggtgttcctggacaaccgtgtacaaggtttgatgcccctcctgga
caccaaacacctcctagatttgatggcccagtacatatgcagcctcggtttgatgcacct
atgccacaaagatttgatggccccaatcaacagcccagatttgatatgcctcttggcccc
caaggacaacggttcgaaaatatgaatcctcctattggacagaatcctccacccattgga
cagactcctcctccaccctttgttcagactgctccttttgatccccaaaacgtgtttcat
ggacagtcgcaaggaatgccatttcaaaggccagaacaaagatatgacctgcctcaaggc
ccgagatttactgggcccccggcccctggaatgcagatgtttcctaaccagctccccaga
ccatcaggaccctatttcgatgacaaaaatccacaggcgcctccttttgggaacttcaac
ctacctgttgcaagtatgcagcaaaaccctccattttcaactatggctcaaccgcaacct
acaccttttaatccagagtcaatgatgggcacaacacaagcaccaaatcaaggatcattt
attataccaccccaaccagctgctgcctttcctaaccctgaaaatcacttgtgtcagttg
gatgttaatgaattattttcaaagctgctttcaactggaatccttaaaggggcaaagtct
gagccatcttcctcccaaactgaaacacccagtcagcctgcaactgaggaggaggaagag
gaaccggttgaagaacacgatattcctgatcttaccagctttgtcttagaagatatgaaa
caacgctttgactgtgttataacacgcctgtacactggtatccagtgctattcatgtgga
atgaggtttacaaagtcacaaaccgacgtatatgctgaccatttagattggcattaccgg
caaaacaggacagaaaaagatgtgagcaggaaaataacacacaggagatggtactacagc
ttgacggattggatagagtttgaggaaattgcagatctggaggaaagggctaaaagccag
ttttttgagaaagtccatgaggaggtcatattaaaaacccaggaagctgctaaggagaaa
gaatttcagagcgtgccggctggtcctgcaggagctgacgagatttgtgaaatatgccag
gagcagtttgaacagtattgggatgaggaagaggaggagtggcatttgaaaaatgctatg
cgtgttaatgacaagatttatcatccttcctgttttgaagattataaaaatacttcttcc
tttttggactccacaccatctccgagtaaagcactcctggaaaatccactgagtgccatg
ctaagtttagttaaggaggaagcgaccgacactaccgaaattgcactcacagtgaaggaa
gagcctacagaggacagaccctgtagtaagggcgaaaccatacctctgttaacggagatc
aaattggaacccaccgatccagagcagaagccgctgccataa
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integrated database retrieval system
