Rana temporaria (common frog): 120929597
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Entry
120929597 CDS
T07929
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120929597 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120929597 (PRPF40B)
Spliceosome [BR:
rtem03041
]
Complex A
U1 snRNP components
U1 related factors
120929597 (PRPF40B)
Complex B
120929597 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Glyco_hyd_101C
WW_1
WW_2
DUF4936
DTW
Motif
Other DBs
NCBI-GeneID:
120929597
NCBI-ProteinID:
XP_040197149
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All DBs
Position
2:complement(140104577..140223099)
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AA seq
924 aa
AA seq
DB search
MGRSLSRLTAGAGMSAPDSGTAAPPGQSAAFPTALPLMPPPFMHPLGLPPPFPPIGLPPV
GQRPPTMPPIPLAMMPPMIPPMAGPPPLAQLPSLVPPLMPTMMLPAVTTTASSMVTAPGI
ESVSSAVPAPSMPKITVDDKSPSQDIPKKKSPWTEHKAPDGRTYYYNTETKQSTWEKPDE
FKSKSELLLSQCNWKEYKSDSGKPYYYNAQTKESRWTKPKDFEELEVLIKQEAEAGIDHE
NQSAASSPHSAAPSDTEMTPAEEIRVTQPSVPERTDTPEIEATQEDSADYQNEISNSDSS
QLEDENKVEPEEKVYHWNTKEEAKQLFKELLKDKGVLSNASWEQAMKLIINDPRYSALPK
LSEKKQAFNAYKSQREKEEKEEARLRAKEAKERLQHFLEQHDKMTSITRYRKAEQMFGDQ
EEWSDVPERDRKEIYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDKMNNVSFQTTWSEA
QQYLMDNPMFAEDEELQNMDKEDALVCFEEHIRALEKDEVEEKEKNRVREKRQQRKNRES
FQVFLDELHETGQLHSMSTWMELYPFVSTDSRFANMLGQTGSTPLDLFKFYVEDLKARFH
DEKKIIKDILKDRNFSVEVNSTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARER
ERGKEEARKFRRKEAAFKSMLKQAAPPMEADSSWDDVRERFVGDSAFNQITVESERIRLF
KEFVLSIENEYQHHHLKGKKHSKKSKKHHRKRSHSQSQSPVERVKKKALDPFNAWDNAGT
VEKASETDEENHQHRPQKRKRRNNSGSGSDISSSLDSEHSTKKSKRQKKKSKKKRHKSNS
PESESEKDKEKNKRERDQEGEQLKERAKDRDQDLEVETADGHYRSLKQAKRKEKTGWDTS
ESELSEGELEKRRRTLLQQLDDDQ
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggggaggagcctgagtcggctcacggctggagcagggatgtctgcaccagactcagga
acagcagctccacctggacagtctgcagcttttcctactgctcttcccctgatgcctcca
ccctttatgcatccccttgggcttccacctccatttccaccaattggattgccaccggtt
gggcagaggccccccacaatgccaccaattccacttgcgatgatgccaccaatgatccca
cccatggcaggaccaccacctctcgctcagcttccaagcctggtgccgccattaatgcca
accatgatgctaccagcagtaacgaccacagcctcttcaatggtgacagctccaggaata
gagtctgtcagctcagcagtgccagctccatcgatgccaaagataactgtggatgacaag
tcaccctctcaggacattccaaaaaagaaatccccgtggacagaacacaaagcaccagat
ggacgaacctactactacaatacagaaaccaagcaatccacctgggagaagccagatgag
tttaagtctaaatcagaacttctcttgtcacagtgtaactggaaggaatataaatctgat
tcaggcaaaccctattattataacgctcaaaccaaggaatcacgctggaccaagcccaaa
gattttgaggaactggaggttttgataaaacaagaggcagaagctggaattgaccatgag
aatcagtctgctgcatctagtcctcattctgcagcaccttctgatactgaaatgacacca
gcagaggagatcagagtcacccagcccagtgttccagaacgcactgacacccctgagata
gaagctacgcaggaagactccgcagattaccagaatgaaatctctaacagtgattcttca
cagttggaggatgaaaacaaggtagaaccagaggaaaaagtttaccattggaacacaaag
gaagaagcaaagcaattgttcaaagaactactaaaagacaagggggttctttccaatgcc
tcatgggaacaagcaatgaaattgattataaatgatcctcgctacagtgcattgcccaag
ttgagtgaaaagaagcaggcattcaatgcttacaagtcacagcgtgagaaagaagaaaag
gaggaggcgagacttagagctaaagaagcaaaagagaggctacagcacttcctagagcaa
cacgacaagatgacttcaatcactcgctacaggaaagccgaacagatgtttggtgatcaa
gaagagtggtctgatgttccagagcgagatcgcaaagaaatttatgatgatgttctcttc
ttcctagcaaaaaaagaaaaggaacaggcaaagcagctaaggaaacgcaatgttcaagca
ctgaagaatatcctagataagatgaacaatgtcagctttcaaactacatggtcagaagcc
cagcaatatctcatggataaccccatgtttgcagaggatgaggagctgcagaatatggat
aaagaagatgccctcgtttgctttgaggagcacattagagctctggagaaagatgaggta
gaagagaaagagaaaaaccgtgttcgcgagaaacgccagcagcgcaaaaatcgagaatct
ttccaggtgtttcttgatgaacttcatgagaccgggcagttacactccatgtctacatgg
atggagctctacccttttgtcagcactgactctcgttttgctaacatgctgggacagaca
ggatctactcctctcgatctgttcaaattttacgtggaagatctgaaggctcgattccat
gatgagaagaagatcattaaagacatattgaaggaccgtaacttcagtgtagaagtgaac
agtacatttgaagactttgctcacattatcagttttgacaagcgggccgccacacttgat
gcagggaacattaagctaacatttaatagcttgctggagaaagccgaagctcgggagcgt
gagcgaggaaaagaggaagcccgcaagtttcgaaggaaggaagctgcatttaaaagcatg
ttgaagcaggcggctcctccaatggaagcagacagcagctgggatgatgtccgagagcgc
tttgttggagacagtgcattcaatcaaatcacagtagaatcggaaagaatccgtctgttt
aaggagtttgttttatctattgagaatgaatatcagcatcatcacttaaaaggcaagaag
cactcaaaaaaatccaagaaacaccaccgtaagcgctctcactcacagtcacagagtcct
gtggaacgagtgaaaaagaaggctttggacccatttaatgcatgggacaatgctgggact
gtggagaaggcttctgaaactgatgaggaaaaccaccagcatcgaccacagaaaagaaag
aggagaaataattcagggtcaggatctgacatatcatcatcacttgattcagagcatagc
accaagaaatccaagagacagaagaagaagagcaaaaagaaaaggcacaaatcgaacagt
ccagaaagtgaatcagaaaaggataaagaaaaaaacaagagagaaagagatcaagaaggc
gagcaactgaaagagagagcaaaagacagagaccaagatctggaggtggagactgcagac
ggtcattatagatcattaaagcaagccaaaagaaaggagaaaacaggctgggacacatca
gagagcgagctcagtgaaggagagctggaaaagagacgacgaacactactacagcagctg
gacgatgatcagtag
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