Rana temporaria (common frog): 120929670
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Entry
120929670 CDS
T07929
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120929670 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtem01009
]
120929670 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtem04515
]
120929670 (PCDH20)
Protein phosphatases and associated proteins [BR:
rtem01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120929670 (PCDH20)
Cell adhesion molecules [BR:
rtem04515
]
Cadherins
Protocadherins
120929670 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_4
He_PIG
DC_STAMP
Motif
Other DBs
NCBI-GeneID:
120929670
NCBI-ProteinID:
XP_040197282
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All DBs
Position
2:complement(159637205..159642235)
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AA seq
925 aa
AA seq
DB search
MTAVSLGLNYQGNERITQHTGGQSWLLKPFNLDMGQQANPTRITLTHAQPYLFLYLIALY
AGPRLSLASYSTASELLYTLQEGFPKGYLIGNIVHDLQLGTDPPLLFSLASKGLSGKYVT
LNDSTGELYTSAEELDREALCPQNSGIQDCALLLDIIILPQEYFRLIKVKIAIVDVNDNA
PVFPVGQIYITVPENAPVNTRLVIEHPANDPDGGMNGVQTYRLVDNYGVFTLDVEENESG
ERTPYLIIMGPLDREVKSEYKTIIIAEDGGNPPLVGSATLSILISDVNDNCPQFNESLIN
VMLPGNTSTGVKVTSVQAEDKDLGNNALITYAFSERVPHSSKELFELDESTGVIKLSKKI
DGGTIKQHKLTVLANGPGCIPAVITVIISIVKVTFRPPEVIPRYIASEENGIVYLKELEP
IHSPIAFFTIKDPDGKYKVNCYLEGEGPFRLTAYKPYTNEYLLETTNALDYEVKRVYNIA
VVAVGIHGAHVKTSLQVQILDENDNAPVFTQSTIEVSIEENNPANAFLAKLHATDVDSGE
RGQVSYYLGADAPSYFALDKQTGILTVSTLLDREEKERYRFTVKARDFGTPPKESVATVH
ITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVISVTDADSGQNGWVALSIVNGSDIFV
IDTGKGLLRAKVSLDREQQSSYSLWVEASDGGDPTLSSTAKITILLLDVNDNPPLVLFPQ
SNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFKIDPKTGNITL
EEALMRNDYGLYRLLVKVSDHGYPEPLFSTVMVNLFVNDTVSNESYIESLLKKDPDINIE
EKEPQIAIEPTQKKMEADSCVPTLVTLSIFCFASIILVTLMAMYICLRRGKKAHRINENL
EVQIPLNGKLDFHLLDKKPIEISNI
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagtttcattgggattaaactaccaagggaatgaaaggatcacgcagcacaca
ggaggacagagctggcttctaaagccgttcaacctggatatggggcagcaagccaatcca
accaggatcacacttacccatgcacagccctacttgtttctgtatctaatcgcgctctac
gccggacccaggctcagcttagcaagttacagcacagcttcggaattgttgtacacgctg
caagaaggatttcctaaggggtatctcattggaaacattgtgcatgatctgcagctgggg
actgacccccctcttttgttcagcttggcatctaaagggcttagtgggaaatatgtgaca
ctcaatgacagcacaggggagctgtacacatcagcagaggagttggacagagaagccctc
tgcccgcagaactctggcatccaggattgtgcccttctgcttgatattatcattctgcca
caggaatacttccggctcatcaaagtaaagatcgctatcgttgatgtgaatgataatgct
cctgtgtttcctgtgggacagatttacattacagttccggagaatgcacctgttaacaca
aggctggttatagaacatcctgctaatgaccctgatgggggaatgaatggggtccagacc
tacaggttagtggacaactatggtgtgtttacattagatgtagaagaaaatgaaagtggg
gaaaggacgccttacctaattatcatggggcccctggacagagaggtcaaatctgagtat
aaaacaattataattgcagaagatggaggcaatccacctcttgttggctctgccaccctt
tccattcttataagtgatgtcaatgacaactgtcctcagttcaacgagtctttgattaat
gtgatgcttcctgggaatacgagcactggggtaaaggtaacttcagtgcaagctgaggac
aaggatttggggaataatgccctgatcacttatgcctttagtgaacgggttccacattca
tcaaaagaactttttgaattggatgaatcaacaggagtaataaaactttccaagaagata
gatggtggtaccatcaaacaacataagctaactgtacttgccaatggtcctgggtgcatc
ccagctgtgataactgtcatcatttctattgtaaaagttacgttccgcccaccagaagtc
ataccacgttatattgccagtgaagaaaatgggattgtgtatttaaaagagctagaacct
atccactctccaattgctttttttactatcaaagacccagatggcaagtacaaagtaaat
tgctacttggagggagaaggaccatttcgtctgactgcatacaagccttatacaaatgaa
tatttgcttgaaactacaaatgctctagattatgaggtgaagagggtctataatatagca
gtggttgcagttggcatacatggggctcatgttaagacgtcattacaagttcagatcctg
gatgagaacgataatgctcccgttttcactcagtctacaatagaagtgagcatagaagaa
aacaatccagccaatgcttttctggccaaattgcatgctacagatgttgacagtggtgaa
agaggacaggtttcctattatttaggagcggatgcaccttcttattttgctctagacaaa
caaaccggaattcttacagtttccacattgctagaccgagaggagaaggagagatacagg
ttcactgtaaaagccagagactttggcacacctccaaaggagtcagtagccactgttcat
attaccgtgctggacaaaaatgacaacagccctcgtttcatcaacaaagatttcagcttt
tttgttcctgagaactttccaggctttggtgaaattggagtaatcagtgtcacagatgct
gactctggacagaatggatgggttgctctttctatagtgaatggaagtgacatttttgtc
attgacactggcaaaggactcttgagagcaaaggtatcactggacagagaacaacagagt
tcttatagtctctgggtcgaagcgtcagatggtggtgacccaaccttgtcttctacggct
aaaattactatactgcttctggatgttaatgacaacccaccactggtgttattccctcaa
tcaaacatgtcctatcttctagtcctgccttcaactctacctggctcccctgtcaccgag
gtttatgctgtggataaagacacagggatgaatgcagttattgcttacagcataatagga
aggaggggtcccaggccagagtcatttaagatagatcccaagacaggaaatataacttta
gaagaggccctgatgaggaatgactatggtttatacaggttgttagtgaaagttagtgat
catggctatccagaaccactgttctccacagtgatggtcaacctgtttgtgaatgacact
gtcagcaatgaaagctacatagaaagtttgcttaaaaaagatcccgacattaacatagaa
gaaaaagagccccagatagcaattgagcccactcagaaaaagatggaggcggattcctgt
gtcccgacactggtcaccctgtccattttctgctttgcctccatcatcttagtcactcta
atggcaatgtacatctgcctaaggagaggcaaaaaagctcacagaatcaatgaaaatctt
gaagtgcaaatcccactcaatggcaaattagactttcatttgcttgataaaaagccaatt
gagatttctaatatttaa
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