Rana temporaria (common frog): 120931507
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Entry
120931507 CDS
T07929
Symbol
NEO1
Name
(RefSeq) LOW QUALITY PROTEIN: neogenin
KO
K06766
neogenin
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04350
TGF-beta signaling pathway
rtem04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
120931507 (NEO1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120931507 (NEO1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtem04515
]
120931507 (NEO1)
Cell adhesion molecules [BR:
rtem04515
]
Immunoglobulin superfamily
DCC/UNC5 family
120931507 (NEO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
V-set
NDNF
Interfer-bind
Tissue_fac
fn3_2
C2-set_2
C1-set
SusE
DUF4998
C2-set_3
Ig_4
C2-set
Sp38
V-set_CD47
Ig_6
EphA2_TM
FAM176
Motif
Other DBs
NCBI-GeneID:
120931507
NCBI-ProteinID:
XP_040198961
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All DBs
Position
3:complement(96313118..96536450)
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AA seq
1422 aa
AA seq
DB search
MAAWGPPRSPVRMTRVLLLVGSILLLISVQEPAGAARTAGSGFRTFTPFYFLTEPVDTVT
LRGTPAILNCSVYAEPSAKIEWKKDGTFLSLVSDDRRRLLPDGSLFITSVVHSKHNKPDE
GFYQCVATVESLGSIVSRTAKLSVAGLPRFSSQPEASSVYIGDSFVLSCDVSPELVSFVH
WEQDRSLRELDDRTSLLYNGSLVISNANESDAGLYRCGVGSGASLKYSEEAEIKVLQEMG
EYRSLVFMRQPFSVTSVAGQTVLLSCVVSGFPTPNIHWSHKQEEIVLDSSDRLALLAGGS
LQISNLTEEDAGIYTCTADNGNQTIQAQAELIVQVPPVFNVKPSNTHAHESMDIVFECEV
SGKPTPAVKWVKNGDMVIPSDYFKIVDDHDLQVLGLVRSDEGFYQCIAENEVGNVQAAAQ
LIILEPAATPGGPLPSSPRDVVASLVSTRFIKLTWRVPADAHGENLTYQVYYSKEGMNRE
RVENTSRPGELQVTIQNLLPETVYYFRVVAQNNHGTGESSTPLKVETQHEVQVPGPAPNL
RATSTSPTSVSVSWETPLSGNGEIQNYKLYYMEKGAGNEQDIDVGGLSYTVTGLKKYTEY
TFRVVAINKHGPGVSTQDVIIRTLSDVPSAAPQNLTLEVRSSQSILVQWQPPPLGTQNGQ
IVGYKLRYRKTARKTETIEILVENQLSQLVTGLEKNTEYSFRVVAMTVNGSGPATDWAAA
DTFENDLDESRVPDMPSSLHVRPLVTNIVVSWTPPENQHQVVVRGYAIGYGLGSPHAQTV
RVDHKQRYYTIENLDPSSHYVISLKAFNNMGEGIPLYESAVTRQHTDTSEVDVYVVHXPH
TPQFPEPSPMLPPVGXPATILSSDTVRLTWADNSLPKTRRSQMHVIISAKWKTNIPANTK
YKMANSTTLSYLVSGLKSNTLYEFSVMVTKGRRSSTWSMTAHGTTFESVPSSPPKDVTVV
SKEGKPRTIIVNWQPPSEANGKITGYIIYYSTDVHAELHDWVIEPVVGNRLTHQIQELTL
DTPYYFKIQARNSKGMGPIQKLCFFRTPKASGVSGKGRSSEMGTTPLGGSNSPHGSPTSL
DQNMLLTIIVSLGVITVLVAVVIAAICSRRSNAHHKKKRAACKSVNGSHKYKANSKDVKP
PDLWIHHERLELKPVDKSPETNPMLTDTSLPRSPQDLTPGESTTEGSIHQHSNSYRGLES
EDSVSSLAGRRGMRPKIMMPFDSQPPQPVVSAHPIHSIDNSNFRSVPGFMLHVLGGTSHS
AESVRHTPSCDTVVVAAAAASSTSQTGGEDPDPPGGSFLPGSLDEDSGPSIPTAHIRPTH
PLKSFAVPAVPVPASGAAFEPLPSSPLLAQQGPSSLSVKTASLGTLGRVRPPLPVTVPSA
PEPLETSRMLDGSESSYEPDELSKEMAHLEGLMKDLNAITTA
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttggggccccccgcggtctcctgtccgtatgacccgggtgctgctgctcgtg
ggctccatccttcttctcatctccgtgcaggagccggctggagccgcgagaactgcaggc
tccgggttcaggacattcacgcccttctactttctaaccgaaccagtggacactgtgact
ttacgtgggactccagccattttgaactgttctgtatatgccgaaccttctgcaaagatc
gaatggaaaaaggatgggacttttttaagtttggtttctgatgaccggcggcgacttctt
ccagatggatctttgtttattaccagtgttgtacactccaagcacaacaaaccagatgag
gggttttaccagtgtgtggccaccgtggagagcttgggcagtattgtcagtcgcactgca
aaactctctgttgcaggtctcccccgattttccagccagcctgaagcctcttctgtgtac
attggggatagttttgtattgagctgtgatgtaagcccagaactagtgtcatttgttcac
tgggagcaggacaggtctttacgagaactggatgacagaacttcattgctgtataatggc
agcttggttatcagcaacgccaatgagagtgatgctggtctgtatcggtgtggagtgggc
agtggagcatctctcaaatacagtgaagaggctgagattaaagtactgcaagaaatggga
gagtatcgctctctggtatttatgcgccagcctttctccgttacaagcgttgcaggacaa
acggtactgctttcctgtgtggtgtctgggttcccaacccccaacatacactggagccac
aaacaggaagaaatcgttcttgacagctcggacagattggcattgttggcgggaggcagc
ctgcagatcagcaatctgacagaggaggatgctgggatctatacatgtacagcagacaat
ggaaaccaaaccatacaggcccaagctgaacttattgtacaagtgcctcctgtttttaat
gttaagccatctaatactcatgctcatgaatctatggacattgtgtttgaatgtgaggtg
agtggaaaacccacaccggctgtcaaatgggtgaagaatggagacatggttattcccagc
gattacttcaaaatagtggatgatcatgatctgcaagttcttggactggtacgctcagat
gaagggttttatcaatgtattgctgagaatgaggtgggaaatgttcaggcggcagctcag
ctgattattttagagcctgctgccacaccaggaggccctcttccatcatccccgagggat
gtcgtggcctctttggtgtccacgcgattcatcaagctgacctggcgtgtacctgcggat
gctcatggagaaaatcttacttaccaagtctattacagcaaggagggaatgaacagagaa
cgtgtggagaacaccagccgcccaggggagttgcaggtcaccattcagaacctactgcca
gaaactgtctattactttcgagttgtggcacaaaataaccatggaactggggaaagttct
acccctctgaaggtggagacacaacatgaggttcaagttccaggtcctgcaccaaattta
agagccacatccacctccccaacttctgtcagtgtcagctgggaaactccactgtctgga
aatggggaaatacaaaactacaaactctactacatggagaaaggtgcaggaaatgagcag
gatattgatgtggggggactctcgtatactgtcactggactgaagaaatacaccgaatat
acattccgagttgtggcgattaacaaacatgggccaggagtgtcaacgcaggatgtcatt
atcaggactctttctgatgtacccagtgctgctcctcaaaacctgaccctggaagtgcgc
agctcacagagcatcctagtgcagtggcaaccccctcctctgggcactcagaatggacag
attgtaggttataagttgcgttaccgcaagactgcaagaaaaactgaaactattgagatc
ctggtagaaaaccagctctcacaacttgttactgggctagagaagaacacagaatacagc
tttcgggttgtggccatgaccgtaaatgggagtggaccagccactgactgggctgctgca
gacacatttgaaaatgatcttgatgaatcacgtgttcctgatatgccaagctcacttcat
gtgcgtcctttggtgaccaacattgttgttagctggacacccccagaaaatcagcatcaa
gtagttgtccgtggttatgctattggttatggacttggaagtcctcatgctcagacagtt
cgtgttgaccataaacagcgttactacaccattgaaaatctggaccctagttcacactat
gtcatctctctgaaggcttttaacaatatgggggaaggcatccctttatatgaaagtgct
gtaacgcgacaacatacagacacttctgaagttgatgtttatgttgttcatntgcctcat
acaccccagttcccagagcccagccccatgttgccccctgtggggnntccagcaaccatc
ttgagcagtgacacagtacggctaacctgggcagacaactctctacccaaaaccagaaga
tcacagatgcacgttattatttctgcaaaatggaaaaccaacattccagctaacacaaag
tacaagatggcaaacagtacaacactcagctatttggttagtggtctaaagtcaaacacc
ctttatgagttctcagtgatggttactaaaggtcgacggtcaagtacatggagcatgact
gcccatggcactacctttgaatcagtgccatcctcgcctcctaaagatgtgactgtcgtg
agcaaagaaggcaagccacgcactattattgtgaactggcaacctccatcagaagcaaat
ggcaaaattacaggctacattatatattacagcacagatgttcatgcagagctgcatgac
tgggtaatagagccagttgttggaaatcgcctgacccaccaaattcaagagctgactcta
gatactccatattactttaagatccaagcaagaaattctaaaggaatgggtcccattcag
aagctgtgcttttttcgtacaccaaaagcatcgggtgtatcaggaaaaggccgctcctca
gaaatgggaaccacgccactcggaggcagtaatagtcctcatggaagccctacttctctg
gatcagaacatgctgttaaccatcattgtatcccttggagttataactgtgctagtggct
gtggtcattgctgccatctgctcccgacgctccaacgcccaccataaaaagaaaagagct
gcgtgcaagtctgttaatgggtcccataaatacaaagccaactctaaggatgtgaagcct
cctgatctttggattcaccatgaaagactagagctaaagccagtggacaagtccccagaa
acaaatcctatgctgacagacaccagtctgccccgttccccacaggacctgacacctggg
gaaagcactacagaaggcagcattcaccagcacagcaattcataccgaggtctggaatca
gaggattctgtatcctcacttgcaggacgtcggggaatgagaccaaaaataatgatgccc
tttgactctcagcctccgcagccggttgtcagtgctcatcccatccattccatcgataac
tctaatttccgctcagtgcctgggttcatgctgcacgtgctgggtggaacttctcattct
gcagaatctgtccgacatacccccagctgtgacacagtagtagtagcagcagcagcagca
tcatccacttctcagactggtggtgaggacccagatcctccaggaggcagctttctaccc
ggttctttggatgaagattcaggacccagcattcctacagcacatatcagacccacccat
cccctgaagagctttgcagtacctgctgttcctgttccagcctccggagcagcatttgag
ccactgccaagctctccccttttggcacaacaaggtccgtcctccctatctgtaaaaacg
gcttctctagggaccctggggagagtacgtcctccgcttccagtaactgtgcccagtgcc
cctgaaccactagagaccagcagaatgctagatggctcagagagtagttatgaaccagat
gaactaagcaaggagatggctcaccttgaaggcctgatgaaggatctaaatgccataacc
acagcatga
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