Rana temporaria (common frog): 120931790
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Entry
120931790 CDS
T07929
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120931790 (YTHDC2)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120931790 (YTHDC2)
Spliceosome [BR:
rtem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120931790 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank
AAA_19
Ank_2
nSTAND3
AAA_22
ATPase
FtsK_SpoIIIE
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
120931790
NCBI-ProteinID:
XP_040199545
LinkDB
All DBs
Position
1:140932424..141248131
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AA seq
1453 aa
AA seq
DB search
MIKLGSSLESPGEIPAVGPVYGVRLETEGGHKAVNMSRHNSMSPSPGTPLYPGASKHGKA
KGLKDIRIDEEVKIAVNIALERFRYSDQEEMEFPSSLTSTERAFVHRLAQSLGLISKSRG
KGATRYLTIRKKDGSDTIGSLMTCYLTPNTKQTMRGLIQRFSITNKEKSELLPKTERSNA
FAIEAEKHEMSRSSGRLSNGIPQVPSKRGDSEFDSFRQSLPVYEKREEIINIIKENNILL
VVGETGSGKTTQIPQFILDDCYKHGMPCRLFCTQPRRLAAIAVAERVAAERGEKIGQSIG
FQIRLESRVSPKTLLTFCTNGVLLRTLMGGDSTISTVTHIIVDEVHERDRFSDFLLIKLR
DVIKKHPTLKLILSSAALDVNLFLRYFGGCPILYIPGRPFEVKEMFLEDILRTTGYTNKD
MLKYKKEKQCEEKQKSALSEWHLVTPENGKSETETQRQRSASNITKDYDLLDDGGDTFNQ
LMEKDRNSLEPWIIREMDSCLSDIWLNKDVDAFPQLFNLILTENVSVDYRHSETGATPLM
LAAGQGFLSQVEQLISMGANIHSKASNEWMAVDWARHFVQADVVDLLESYSASKDPNCLD
ESSLVQADGSNLSEEEQELLKAYHHSFDDERVDLDLIMHVLYNICQSSESGAILIFLPGY
DEIVGLRDRILLDDKRFADNANRFQVFMLHSNMQTSDQKKVLKTPPAGIRKIILSTNIAE
TSITVNDVVFVIDSGKVKEKSFDALNHVTMLKMVWISKASALQRKGRAGRCRPGVCFRLF
SKLRFQNMLEFQTPELLRMPLHELCLHSKLLAPINCPIADFLMKAPEPPPALVVRNAVQM
LKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVL
PAQAAQKRAAMLCRKRYTADTFSDHMALLRAFQAWQKARSDGWERAFCEKNYLSQATMEI
IIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLIHVDRENMM
LTGSKEKRVRLHPTSVLSQPQYKKIPPENGQAVAVQVLPTDWLIYDEMTRAHRIANIRCC
TVVTPVTVAIFSGPARLPSNALPESAFHVTQDGVPNDSSDSEMEDRATALLTSLKLDEWL
QFKLDSEAAGLLLQLRQKWHILFLKRMRAPSKPWTQADEATIRTVIAVLSTEEQAAGLRQ
PSGIGQRPRPISSEELSVSCSWKNSNSRRSSDADFSDDLPKLDRTNVKSPPPGLTLQTKN
KEKVGLLPKHHEDRSEQMLGKLLESISCTSPCKSPSSPSSVKSPSRPNVSVHYFIMKSSN
LRNLEISQQKGIWSTTPSNERKLNRAFWESSAVYLVFSVQGSGHFQGFARMLSEIGREKS
QEWGSTSLGGVFKVEWIRRENLPFQYAHHLLNPWNDNKKVQISRDGQELEPQIGEQLLLL
WDRVPLGDKSILH
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagcttggctcctccctggaatcaccgggggaaatcccggctgtggggcctgtg
tacggagtgcggctggagacagaaggcggccataaagcagtaaacatgtcaagacataac
agcatgtcgccaagccccggcacaccgctatacccaggtgcttctaagcatggcaaagca
aagggactcaaagacattcgaattgatgaagaagtgaaaattgctgtcaatattgcactg
gaaaggtttcgttatagtgatcaggaagaaatggagttcccgtcttctttgaccagcacc
gagagagcttttgtccatcgtctagcccagtcacttgggctaatatcaaagagtagaggg
aaaggtgctactaggtacttgacaataagaaagaaggatgggagtgacaccatcggctcc
ctcatgacatgctacctgactcccaacacgaagcaaaccatgaggggccttattcaacgt
ttttccatcactaacaaggaaaagtcagaactacttccaaagaccgagcggagcaatgcc
tttgcaatagaagctgaaaaacatgaaatgagcaggtccagtggccgcctgagcaatggc
attccccaagtcccatcaaagagaggagattccgagtttgatagctttcgacagtcctta
ccagtttatgaaaagcgtgaagaaattatcaacattataaaagaaaataatattctgctc
gttgtgggagaaactggatctggaaaaaccacccagatcccacagtttatactggatgac
tgttacaaacatggaatgccatgccgtttattctgcactcagccaaggcgcttggctgca
attgctgttgctgaaagagtggctgctgaaaggggcgagaaaattgggcaatctattggg
tttcagatccgcctggagagccgtgtttctcccaagactctcctgacattctgcaccaat
ggagttcttctgcgcactctcatgggtggagacagcacaatttctactgtgactcatatt
attgtggatgaagttcatgagcgtgatcggttcagcgactttctgttaatcaagctgagg
gatgtgataaagaagcatccaactctgaagctgatcctttccagtgccgccttggatgtt
aacctgtttctcagatatttcggaggctgtcccattttatatataccaggccggcctttt
gaggtaaaagaaatgtttctagaagacatattgcgaactactggctacacaaataaagac
atgcttaaatacaagaaagaaaaacagtgcgaggaaaagcaaaagtcagccctgtctgaa
tggcatttggtaacaccggagaacggaaagtcagaaactgaaacccagaggcagaggagt
gcttctaacattactaaagattatgacttgctcgatgatggaggggacacgtttaatcag
ctgatggaaaaggatcgaaacagcctagagccctggataataagagaaatggactcctgt
ctctcagatatttggctgaacaaagatgttgatgcttttcctcagctttttaacttgata
ttgacagaaaatgttagtgttgactatagacacagtgaaacaggtgcaactcccttgatg
ttggcagctggacaaggatttttgagtcaggtggaacagcttattagcatgggagccaat
attcacagcaaagcttcaaatgaatggatggctgtggactgggctaggcactttgttcag
gctgacgttgttgatctgctggagtcctacagtgcttcaaaggacccaaactgtttggat
gaatcctctctggtccaggctgatggcagtaacctgagtgaagaggagcaggaactcctc
aaagcgtaccaccacagttttgatgatgaaagggtggaccttgatctgataatgcatgtg
ctttataatatttgtcaaagctccgaatcaggggccatactaatatttcttccaggatat
gatgagattgtaggattaagagatcgcattttgttagatgacaagagatttgccgataat
gccaacaggttccaggttttcatgctgcactcaaacatgcagacatctgatcagaagaag
gtcttgaagactcctccagctggaatccggaaaattatactctccactaatatagcagaa
accagtatcactgttaatgatgtcgtatttgtcatagattctgggaaagtgaaagagaaa
tcttttgatgctctaaaccatgtcacaatgctgaagatggtttggatttccaaagctagt
gctcttcaaaggaaaggaagggctggtcgctgcagacctggagtctgtttccgcctgttc
agcaagctccgttttcaaaatatgttggagtttcagacaccagaactattacgaatgcct
cttcatgagctttgcttgcattcaaaattactagcccctattaattgtcctattgcggat
tttctaatgaaggcaccagagccaccaccagccttggttgtacgaaatgctgttcaaatg
ctaaagacaattgatgcaatggacacatgggaagacttgacagaacttggatatcatttg
gctgatttgccagtagaacctcaccttggcaaaatggtgctgtgtgctgtggtgctgaag
tgcttagaccccatccttactattgcctgcactttagcgtatcgagatccatttgtctta
ccagcgcaggctgcgcagaaacgtgctgctatgctgtgccgaaaacgatatacagcagac
acattcagtgatcatatggctttactcagggcttttcaggcatggcagaaagcacgtagt
gatgggtgggaacgagccttctgtgagaagaattacctgtctcaggctaccatggaaatt
attattggaatgagaacgcagttgctggggcagctcagggcttcaggttttgtcagagct
cgtggaggaggagacatcagagatgtaaatacaaactcagagaactgggcagtggtaaag
gctgctctagtggctgggatgtacccaaacctaatacacgtggacagagagaatatgatg
ctcacgggatccaaggaaaaacgtgtacgtctccaccctacttcagttcttagtcagcca
cagtataaaaagattcccccagagaatggtcaggcagtagcagtacaagttttacccaca
gactggctaatatatgatgaaatgactcgagcacatagaattgctaacattagatgttgc
acagtggttacaccagtcacagtggcgatcttctcgggacctgcccggctgccaagcaac
gcattgccagagtctgcattccatgtaacccaagatggtgtccccaatgacagcagtgac
agtgagatggaagaccgggccacagctttgttgacatctcttaagctggatgagtggcta
caatttaagctggactctgaggctgctggactcttgctacagctgcggcagaagtggcac
attttgtttctgaagagaatgcgggcaccctcaaagccatggacacaagcggatgaggcc
accatacgaactgtgatcgctgtgctgagcactgaagagcaggctgctggtttacgtcag
ccctctggaattgggcagagaccaaggccaatatcttctgaagagctttctgtgtcatgt
tcctggaagaacagtaatagtcggaggagctcagatgctgacttttctgatgaccttcca
aaactggacagaacaaatgtgaagtctcctcctccagggttaaccctgcagactaaaaat
aaagagaaagtgggtttactcccaaaacaccatgaagatagatcggagcagatgttgggg
aagttacttgaaagtattagctgcaccagtccctgtaaaagcccgtcctcaccctcctct
gtaaagtctccatcacgtccaaatgtatcggtgcattactttataatgaagagcagcaac
ctgagaaatcttgagatctcccagcaaaagggaatttggtccaccaccccaagtaatgag
cgcaaactgaacagagcattctgggagagcagtgcggtgtatctggtgttttctgttcag
ggatctggacattttcagggatttgcaagaatgctttcagagattggcagagaaaagagc
caggagtgggggtccacaagtctagggggagtctttaaagtggaatggatacggagggaa
aacttgccttttcagtatgctcaccacttgctgaacccatggaatgacaataagaaggtg
cagataagtcgtgatggacaggagctggagccacaaataggggaacagttgttgctgctt
tgggacagagttcctttgggagacaaaagtattttgcactaa
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integrated database retrieval system
