Rana temporaria (common frog): 120932328
Help
Entry
120932328 CDS
T07929
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03440
Homologous recombination
rtem03450
Non-homologous end-joining
rtem04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120932328 (RAD50)
03450 Non-homologous end-joining
120932328 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
120932328 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtem03032
]
120932328 (RAD50)
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120932328 (RAD50)
DNA replication proteins [BR:
rtem03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
120932328 (RAD50)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
120932328 (RAD50)
BRCA1-C complex
120932328 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
120932328 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
AAA_29
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
120932328
NCBI-ProteinID:
XP_040200572
LinkDB
All DBs
Position
3:complement(264085922..264355254)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVITFFTPLTILVGPNGAGKTTIIECLKYITTGDFPPG
SKGNTFVHDPKVAHETDVRAQIRLQLRDVNGQLVAVQRSMVCTQKGKKTEFKTLEGVITR
MKHGEKVSLSTKCAEMDREMISTLGVSPAVLNSVIFCHQEDSNWPLSEGRQLKTKFDEIF
SATRYIKALDTLRQVRQKQGQRVKECQTELKYLKQNKEKAREIQDQLRSKEAQLAASKEN
VKSIDNQLDPLKSRLTEIQKNLSKVMKLDNDIKALESRKKNMEKDNQDLEDKIEKIFQGT
DEELNEMYHNHQKTVRDKERKLNDYQRELDRVVKDCQRLNREKGELLVQQGRLQMEADQH
QQHIRTRDSLMKTLAAQLELDGFERTPFSQRQIVSFQKLVKERQEKDEMEANQIMKEFSD
KEAAKQRQIDEIRDKKTGLERTIELKSSMQNKKQGDLRNIKSELQQLEGSSDRLQELDEE
LLKMERELEGVERNCNVEALRSEVEQLQNQRSELDRTVRKLDQEMQQLNAHTMTRTQMDM
LKKDKAEKEDHIRKIKSRHSDELTSLLGYFPTKKQLEDWLYAKQKDINQTRDKLAKLNKE
LVSAEQNKSHMSNELRKKEQQCGSYEEKLFNVCGSQDFDSDVTRLLDDIEKSSKQRAMLA
GATAVYTQFITQLTEDNQPCCPVCQRIFPSEAELQDVINDMQSKLRLVPDKLKSTETDLK
RREKRRDEMMELKPMRQMLIDLKEKEIPELRNQLVAINREIQRLKNDVEEQETLIATFMS
EEDSAKACLQDISLMERYQMELRDVERKIAQHATKLQGVDLNRTVQQVNQEKQEKQHSLD
NVSGKIELLRQRIQDQQEQIQQLKSSANELRAEKLHISSNLQRRQQLEEQSVEMTTELQC
LSREIREAREQVSPLDNTMEKLQQEKKEILQRKDSSYRAVQERLNDIKEKVKKISLYVKD
IEKYISDGREEFKEQKETELQDIIARLNDSEKHKEAINKEMMTIRQDIDTQKIQERCLQD
NLTLRKRLEELKKVEQEREQLLKEMGQMKAAQLRNEYQDLENKIETLKTNHSLALGRQKG
FEDEIMRYKKELREPQYKDAEEKHREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADESVSASDKRRTYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSEYVENFYRIKKNMDQCSEIVKCGVNTLGSYMR
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatagagaaaatgagcatactcggtgtgcgaagctttggagtagaggataag
gacaagcaagtcataactttctttactccgctgacaattttggtaggaccaaatggagca
gggaaaactactattattgagtgcctcaagtatatcacaacgggtgattttccacctggg
tctaaaggaaacacttttgtccatgatccaaaggttgctcatgaaacagatgttagagca
cagattcgtcttcaactccgagatgtcaatggacaacttgtggctgtgcaacggtctatg
gtgtgcactcagaaagggaaaaaaactgaatttaaaacattggaaggagtgatcaccaga
atgaagcatggagagaaagtcagtcttagtacgaaatgtgcagaaatggacagagagatg
atcagtacattaggagtgtcccccgccgttctgaacagtgtcatcttctgtcaccaggaa
gattccaactggcctctgagtgaggggagacagctgaagacaaagtttgatgagatcttt
tcagcaaccaggtatattaaagccttggatactttgcgtcaggtgaggcagaagcaagga
cagcgggtgaaagaatgtcaaacagagctgaagtatctaaaacagaataaggagaaagca
agggaaatccaagaccagctacggagtaaagaggcccagttagcagcctctaaagagaat
gtgaagtctattgataaccaacttgatccactcaaaagtcggttgacggaaattcagaaa
aacctttctaaagtaatgaagctggataatgatataaaagcgttggaaagcaggaaaaag
aacatggaaaaggacaatcaggatttagaagataaaatagagaagattttccaggggaca
gatgaagagcttaatgagatgtaccacaaccatcagaagactgtgagagacaaggaaagg
aagctcaatgattaccagcgtgagctggaccgagtagttaaagactgccagagattaaac
cgagaaaagggggaattgctggtccagcagggccgcctgcagatggaggctgaccagcac
cagcaacatatcagaactcgagactcacttatgaagaccttggcagcacaactggagctt
gatggatttgagcgaacaccattcagtcagagacagatagtaagctttcagaaattagtc
aaagaaagacaagaaaaagatgaaatggaggctaatcagataatgaaggagttttcagac
aaagaagcagctaaacagagacaaatagatgagatcagagacaagaagacaggcctggag
cggactattgagttaaagtcttctatgcagaacaaaaaacagggagacctcaggaacatc
aaatctgagctacagcaactggaaggttcctctgacagactgcaggaacttgatgaagaa
cttctaaaaatggagcgggaactggagggcgttgaacggaactgcaatgtagaagctctg
agatcagaggttgaacagcttcagaatcagaggtctgaactggacagaacagtgcgaaag
ctggatcaggagatgcagcagctcaacgcccacacaatgacacggacacagatggatatg
ctgaaaaaggataaagctgaaaaagaggatcatattcgaaagataaaatccagacacagc
gatgaattaacttctttattgggatacttcccaactaagaagcagcttgaagactggctg
tatgctaagcagaaagatattaatcagacacgggacaagctggccaagttgaacaaagag
ctagtgtcagctgagcagaataaaagtcacatgagcaatgagctacgaaaaaaagaacaa
caatgtggatcttatgaagaaaaactctttaatgtttgcggtagccaagactttgacagt
gatgtaacacgcctgcttgatgacatagaaaagtcttctaaacaacgagcaatgctggca
ggggccacagctgtgtacacccagtttatcacccagctaacagaggataatcagccctgc
tgtccagtgtgccaaaggatcttcccctcagaagccgagctgcaagatgtcattaatgac
atgcagtcaaaattgcgtctggttccagataaactcaaatctacagaaactgatttaaag
agaagagaaaaaaggagagatgaaatgatggagctgaagccaatgaggcaaatgctgatt
gatcttaaggaaaaagaaatccctgaactaagaaaccagttggtggcaataaaccgagaa
atacagcgtttaaagaatgatgtagaagagcaagaaactctgatagcaacttttatgtct
gaggaagacagtgcaaaggcctgtctacaggacatatccctaatggagaggtatcagatg
gagttaagggatgtggagcggaagatagcacagcatgctactaaactgcagggggtggac
cttaatcgtactgttcagcaggtgaaccaagagaaacaagaaaagcagcatagtttggat
aatgtttctggtaaaattgagctgctgcgccagcggatacaggaccaacaagaacagatc
caacaactgaagagttccgccaatgaactgcgagcagagaaactacatatttctagtaat
cttcagcgtcgccagcaattagaagagcaaagtgtagagatgaccactgagctacagtgc
ctgtccagagagatcagggaagctcgagagcaagtatcccccctggataacactatggaa
aaacttcagcaggagaagaaagaaatcctacagaggaaagactccagctacagagcagta
caagaaaggctaaatgatattaaagaaaaagttaaaaagatcagcttgtatgtgaaggat
atcgaaaagtatatcagtgatggaagagaagaattcaaagagcaaaaggaaaccgagctg
caggacataatagcacgtcttaatgacagtgaaaagcataaagaagcaattaacaaagaa
atgatgactattaggcaggatattgatacccaaaaaatacaggaacgatgtctccaggac
aatttaacactcaggaaacgactggaggagttaaagaaggttgaacaagaacgagagcaa
ctactgaaggaaatggggcagatgaaagctgcacaactgagaaatgaatatcaagacttg
gaaaacaaaattgaaacattgaaaacaaaccacagcctggctcttggacgtcagaaagga
tttgaggatgaaatcatgcggtataagaaagaacttcgggaaccccagtacaaagatgct
gaagagaagcacagggagatgatgattgttatgaggaccacagagctggtcaacaaagac
ctggacatttattataagacactggaccaagccataatgaagtttcatagcatgaagatg
gaagagatcaataagattattcgtgatctttggcgcagcacttatcggggacaagatata
gagtacattgagatcagatctgatgctgatgaaagtgtctcagcttctgataagagaaga
acctacaactacagagttgtgatgattaaaggagatactgcacttgatatgagaggacgg
tgcagtgctgggcaaaaggttctggcatctcttattatccgtctggcactagcagagaca
ttttgtctgaactgtggaatacttgccctggatgaacctacaacaaacctggatcgtgaa
aacattgaatctcttgcacatgcattggttgagatcatcaaaagtcggtcaagacagcga
aatttccagctgcttgtgattacacatgatgaagattttgtggagcttctggggcgttca
gaatacgtggaaaacttctaccgaattaaaaagaacatggaccaatgttctgagattgtg
aagtgtggtgtgaacaccttgggatcttatatgcgttag
DBGET
integrated database retrieval system
