Rana temporaria (common frog): 120932759
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Entry
120932759 CDS
T07929
Symbol
SOX5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtem03000
]
120932759 (SOX5)
Transcription factors [BR:
rtem03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120932759 (SOX5)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
DUF7260
Motif
Other DBs
NCBI-GeneID:
120932759
NCBI-ProteinID:
XP_040201356
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All DBs
Position
3:367314643..367597019
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AA seq
766 aa
AA seq
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MLTEPDAPPEFERMSSKRPASPYGDADGEVAMVTSRQKMEDDESGALAAFHLPLHASFPN
KPHAEEFQAVSLLTQDAYDHRSPTYQHSAMDIDGNKVVSSFAPHISATSPMKADEGGRQS
GESVTNNSLGTPERRKGSLADVVDTLKQRKMEEMIKSEPEETPSIEKLLSKDWKDKLLAM
GSGNLGDIKGTPESLAEKERQLMAMINQLTSLREQLLAAHDEQKKLAASQMEKQRQQMEL
AKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAAAQQGF
LIPPGFSYKAGCSDPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGNKMS
GVPQGHLGAASPSNIHSEKCTSSPSPKPKDDVSQPLNLSARPKTSDRRSPASPTSPHIPP
ARMSSGNSSYKPSISSTLASPPVRVNSIDILSSITSTGYLNDHDAVTKAIQEARQMKEHL
RREQQALDGKVAALNNCRTEKDKQSLDCLSQQMAVKQNDDGKFSHSMMDFNLSGDSDGSA
GVSESRIYREARGRGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWK
AMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQE
MRQYFNVGQQAQIPITTTGVVYPGAIAMAGMQSPHLPSEHSSVSSSPEPGMQVIQSTFGI
KGEEPHIKEEMQNDDMNGEIYDEYEDDDPDADFVSDSENHSAAHAN
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccgagccagacgcaccgccggagtttgagaggatgtcttccaagagaccggcc
tctccgtatggggatgcagatggagaggtagccatggtgacaagccggcagaaaatggaa
gacgacgagagtggtgccctcgcagcctttcaccttcccttgcacgccagtttccccaac
aagcctcacgccgaggagttccaggcggtttctttgctgacgcaagatgcctatgaccac
aggagccccacgtaccaacacagcgcaatggatattgatggtaataaggttgtctcttcg
tttgccccacacatctcagctacctcacctatgaaggccgatgaaggtggaaggcaaagt
ggcgagtctgtgacaaataattccctgggaacacctgagaggcgcaaaggtagcttagca
gacgttgtggacacgctgaaacagaggaagatggaggagatgattaaaagcgagccagaa
gaaacgcccagcattgaaaagcttttgtcgaaggactggaaggacaagctcctggccatg
ggatcggggaacctgggtgacataaaagggacccctgagagcctggcggagaaggagcgg
cagttgatggcgatgatcaatcagttgaccagtcttcgagaacagctgctggcagcccac
gatgagcagaagaaactcgccgcctcacaaatggagaaacagcgccagcagatggagctg
gccaaacagcagcaagaacagattgccagacaacagcaacaactattgcagcaacagcat
aaaatcaacttactgcagcaacaaatccaggttcagggtcagttgccccctttaatgatc
cccgtgttccctcctgatcagaggacgctcgcggccgcagctgcagcccagcaaggattt
ctcattcctccgggattcagctacaaggccggttgcagtgacccctacccccttcagctg
attcccactaccatggcagctgctgccgcggcaacgccaggcctggggcctctccaacta
cagcaactgtatgccgctcagctggctgccatgcaagtctccccggggaacaaaatgtct
ggtgtgccgcaggggcacctcggtgctgcgtctccgtcaaatatccattccgagaagtgc
acaagcagcccatcacccaaacctaaggatgatgtctctcagccactgaacctttccgcc
aggcccaagacctcagaccgcagatctcctgcatcacccacctcaccgcacatccctcca
gccaggatgagcagcggtaacagctcttacaaaccgtccatctcctccaccctcgccagt
cctcctgttagagtcaattctatagatatcttatcctccattacgtcgacggggtactta
aatgatcatgatgcagtgactaaggccatccaggaagcacggcagatgaaggagcatcta
agacgggagcagcaagccctggatggaaaggtggcggcactcaacaactgccggacagag
aaggataagcagtccctagattgtctgtcccagcagatggcagtcaagcaaaacgatgat
ggaaagttcagtcacagcatgatggattttaatttgagcggagactctgacggaagtgct
ggtgtgtctgagtcccggatatatcgagaggcccggggccgcgggagcagtgagccacat
atcaaacgtccaatgaatgccttcatggtgtgggcgaaggacgagcggaggaagattctc
caggctttccccgacatgcacaattcaaacattagcaaaatactagggtctcgctggaaa
gccatgacgaatctggagaagcagccttactatgaagagcaagctcgacttagcaagcag
catctggagaaatacccggactacaaatacaagccacggccaaaacgcacctgcttagtt
gatggcaaaaagctgcggatcggcgagtacaaggcgatcatgcgcaaccggcggcaagaa
atgagacagtatttcaatgtagggcaacaagcacaaatccccatcactacaacgggtgtg
gtgtacccaggagccatcgcaatggcaggcatgcaatcacctcacttgccgtcagagcac
tcgagcgtctcgagcagtccagagcccggcatgcaggtcatccaaagcacttttggcatc
aaaggagaggagcctcacatcaaggaggagatgcaaaatgatgacatgaacggtgaaata
tatgatgagtacgaggacgacgatccggacgcagattttgtcagtgacagtgaaaatcac
agtgcggcacacgccaactga
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