Rana temporaria (common frog): 120932858
Help
Entry
120932858 CDS
T07929
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rtem03016
]
120932858 (RTCB)
Enzymes [BR:
rtem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
120932858 (RTCB)
Transfer RNA biogenesis [BR:
rtem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120932858 (RTCB)
Prokaryotic type
tRNA splicing ligases
120932858 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
120932858
NCBI-ProteinID:
XP_040201586
LinkDB
All DBs
Position
3:complement(379339287..379364678)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKIHKNCWRIRKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYDE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIVVNDRQLACARISS
PEGQDYLKGMASAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKEKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgacgagttacagtttctggacaagatccacaagaactgctgg
agaatccgcaagggattcgtccccaacatgcaggtggagggtgtattctatgtaaacgat
cccctggagaagttgatgtttgaggaactgagaaatgcctgtcgaggtggaggagctggc
ggtttccttcctgctatgaagcaaattggcaacgtggcagccttaccaggaattgtccat
aggtccattggtcttcctgatgtccactccggctatggatttgccattggaaacatggct
gcttttgatatggacaacccagacgctgttgtatctccaggtggtgtcggatttgacatt
aattgtggagtccgtttgctacgcaccaatctggacgagggtgacgtacaacctgtaaag
gagcagctggcccaggcaatgttcgaccacattcccgtcggagtgggatcaaagggcgtc
atccccatgagtgccaaggacctggaagaggctctggagatgggtgtggattggtctcta
agggaaggctatgcttgggcagaggataaagagcactgcgaggagtatggcaggatgctg
caagctgaccctagcaaggtgtcttccaaagccaagaagagaggcctaccccagttggga
actctgggtgctgggaaccactatgcagagatccaggtggtggatgaaatctatgatgaa
tatgctgccaagaagatgggcattgatcacaagggtcaagtgtgtgttatgatccacagt
ggtagccgaggcctggggcaccaagtggccacagatgccttggttgctatggagaaagcc
atgaagagggataagatcgtagtcaatgatcggcagttggcatgtgctagaatttcctct
cccgaaggccaggattatctaaaaggcatggcttcggccggcaactatgcctgggtgaac
cgctcatccatgaccttcctcacaagacaggcctttgccaaagtgtttaacaccactcct
gatgacctggacatgcatgtcatctatgatgtctctcacaatattgccaaagtggagcag
catgtggtggacggaaaggagaagaccctattggtacacaggaagggatcaacgcgagcg
ttcccaccccatcacccgctgattgctgtggattaccagttgaccggccagccagtgcta
attggtggcacaatgggaacatgcagttatgtcctaactggaactgaccaaggaatgact
gagacatttggcactacttgccacggagctggacgtgctctgtccagagccaagtctaga
cgtaacctggactttcaggatgtacttgacaagctggcggataagggtatcgctatacga
gtggcctcaccaaagttggtcatggaggaggctcctgaatcatacaaaaacgtcacagat
gtagtaaacacatgtcacgatgcaggaatcagcaagaaagccatcaagctgcgtcccatc
gccgtgattaagggctga
DBGET
integrated database retrieval system
