Rana temporaria (common frog): 120936189
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Entry
120936189 CDS
T07929
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem00100
Steroid biosynthesis
rtem01100
Metabolic pathways
Module
rtem_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
120936189
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
rtem01006
]
120936189
Enzymes [BR:
rtem01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
120936189
Prenyltransferases [BR:
rtem01006
]
Terpene biosynthesis
Squalene/phytoene synthase
120936189
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SNAPC1
MraZ
Motif
Other DBs
NCBI-GeneID:
120936189
NCBI-ProteinID:
XP_040204289
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All DBs
Position
4:45476465..45546030
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AA seq
400 aa
AA seq
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MEFLRSLFYPKEIYNLIRYKMGGLAKVEQDPMSESLQTCYKFLEETGRSYALVIQALEGE
LRHAACILYLVTRAVDTVEDDPTISLETKIHILTNFQNFLYQPDWRFMDSKQKNRIVLED
FPTISREFRNLAVVYQEVIANAAHEVALGMVEYLPKQVETVQDWDKYCYYASSPTVIGLS
VMFSVSGLEEPIVGEDTRISISVSLLMQKINLIRDFLEDQLNGLELWPKEVWSKYGKNLS
DFAKPENIVPAVQCLNELITNILQHVPDVLLYLSRLQNQRVFKFCAVPLMMAIATLATCY
NNWQLFKRKVKIRKGQTVTLMMETTDMQTVRAITSQYVEEIYQKIPPKDPSSEKTQNILA
TIRKLSVPNGATGGPLLAVTEQYSGRGSTWTSGNAPISPW
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggagttcctgaggtcactcttctaccccaaggagatctacaacctcatcaggtacaag
atgggcggcctggccaaggtggagcaggaccccatgagtgagagcctgcagacctgctac
aaattcctggaggagacgggcaggagctacgcacttgttatccaggccttggaaggggag
ctacgccatgcagcctgtatcctctatctggttacaagggctgtagacactgtggaggat
gacccgactatcagtctggagaccaagatccacattctgacaaactttcagaacttcctg
taccagcctgactggaggttcatggacagcaagcagaagaatcgcatagtgctcgaggat
ttcccaacaatctctcgggagtttaggaatttggctgtggtctaccaggaggtgattgcc
aatgctgctcatgaggtggcgctggggatggtggagtacctaccgaagcaagtagagact
gtacaagattgggacaagtactgttattacgcatctagtccaacggtaattggtctgtca
gtaatgttctctgtctcagggctggaagaacccatagtaggagaagacacaaggatctcc
atctctgtaagtctcttaatgcagaagatcaacctcatccgtgatttcttggaagaccag
ctgaacggactagagttgtggccaaaagaggtgtggagtaaatatgggaagaacttgtct
gactttgccaagccagaaaatattgtgccagctgtgcagtgtctgaacgagctcatcaca
aatatcctgcaacatgtgcctgatgtcttgttgtacttgtcccgactgcaaaaccagcga
gtgttcaaattctgtgcagtccccctgatgatggctatcgctacattggccacctgctac
aacaactggcaactgtttaaaagaaaggtaaagatccggaagggccagactgtgactctg
atgatggagactacagatatgcagactgtaagagccatcacatctcagtatgtggaggag
atctatcaaaagattcccccaaaagacccatcatctgaaaagacgcaaaacatcttggct
accattaggaaactaagtgtgcccaatggtgctactggtggccctctgctggcagtaact
gagcaatattcaggacgggggtccacatggaccagtggcaatgcacccatctctccatgg
taa
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