Rana temporaria (common frog): 120936190
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Entry
120936190 CDS
T07929
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem00100
Steroid biosynthesis
rtem01100
Metabolic pathways
Module
rtem_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
120936190
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
rtem01006
]
120936190
Enzymes [BR:
rtem01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
120936190
Prenyltransferases [BR:
rtem01006
]
Terpene biosynthesis
Squalene/phytoene synthase
120936190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
DUF5865
Motif
Other DBs
NCBI-GeneID:
120936190
NCBI-ProteinID:
XP_040204291
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All DBs
Position
4:45565064..45592999
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AA seq
379 aa
AA seq
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MVWSQWKKRRICGYSITQPLYTTQTNNSLGSTDPMSESLQTCYKYLNETGRSYAPITQTL
KGELRHIFCILYLVVRAMDTVEDDMTISLETKVPILKNFHNLLYQPDWRFMDSKKQSRQV
LEDFPTISQEFRNLAVAYQEVIANVACEIADGMVEYLQKQVESVQDWDKYCDHVFASVTR
GMSVIFFVKGLENPIVGEDKRLSTSFGLFLQKSNIIRDFLEDQVNGQAFWPKEVWSKYGK
NLCDFTKPENIVPALQCLNELITNDLQYVPDVFLYLSQLRNQSVFKFCAVQMMIAIATLA
ACYNNQQVFEGVVKIQKGQVETLVMDITDMQAVRAITRQYVEEIYRKIPPTDPSSEQTQN
ILATIRKLSMPNDTTDSPQ
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggtctggagtcagtggaagaagaggaggatctgtggatacagcatcacacagccttta
tacacaacacagacgaataactccttaggttccactgatcccatgagtgagagcctgcag
acctgctacaaatacttgaatgagacgggcaggagctacgcaccaatcacccagaccttg
aaaggggagcttcggcacatattttgtatcctctatctggttgtgagggctatggacact
gtggaagatgacatgactatcagtctggagaccaaggtccccattctgaaaaactttcac
aacctactgtaccagcctgactggaggttcatggacagcaagaagcaaagtcgccaagtg
cttgaggatttcccaactatctctcaggagttcaggaacttggctgtggcctaccaggag
gtgattgctaatgttgcttgcgagatagcggatggaatggtggagtacctacagaagcaa
gtagagtctgtacaagattgggacaagtactgtgaccatgtattcgcttcggtaacacgt
ggcatgtcagtaatattctttgtcaaaggtctggagaatcccattgtaggagaggataag
aggctctccacctcttttggtttgttcctgcagaaatccaacatcatccgtgatttcctg
gaagaccaggtgaatggccaagctttctggccaaaagaggtgtggagtaaatatgggaag
aacttgtgtgactttaccaagccggaaaatattgtgccagccttgcagtgcctgaatgag
ctcatcaccaatgacctgcaatatgtgcccgacgtatttctgtacctgtcacaactgaga
aaccagagtgtgttcaaattctgcgcagtccagatgatgatagctatcgctacattggcc
gcctgctacaacaaccagcaagtgtttgaaggagtggtgaagatccagaagggccaggtt
gagactctggtgatggacattacagatatgcaggctgtaagagccatcacacgtcagtat
gtggaggagatctaccgaaagattcccccaacagacccgtcatctgaacagacacaaaac
atcttggctaccatcaggaaattaagtatgcccaatgacaccacagattccccccaatag
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