Rana temporaria (common frog): 120936525
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Entry
120936525 CDS
T07929
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04136
Autophagy - other
rtem04140
Autophagy - animal
rtem04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120936525 (ATG16L1)
04136 Autophagy - other
120936525 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120936525 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtem04131
]
120936525 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
rtem03029
]
120936525 (ATG16L1)
Membrane trafficking [BR:
rtem04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120936525 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
120936525 (ATG16L1)
Mitochondrial biogenesis [BR:
rtem03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120936525 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_RIG_2nd
eIF2A
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
NBCH_WD40
Ge1_WD40
Beta-prop_NWD2_C
Beta-prop_SPT8
Seryl_tRNA_N
CCDC93_CC
APEH_N
V_ATPase_I
HEF_HK
WD40_like
Peptidase_M15_4
Motif
Other DBs
NCBI-GeneID:
120936525
NCBI-ProteinID:
XP_040204890
LinkDB
All DBs
Position
4:120186087..120258043
Genome browser
AA seq
622 aa
AA seq
DB search
MATHYKAGGFPGWRIHISSELRRRDREQRQAFEELILQYNRLLEKSDLQSVLAEKLQAEK
YDLLSRHDTSPGPDGMRNDAILQDMAQMRIKHQEELTDLHKKRGELAQTVIELNNQMNQK
DKEIQANKETIEDYMRSINGLETECQELRNKLQELERVNQTLKDEYDALQITFNALEEKL
RKTTEDNQELVTRWMAEKAQEANRLNAENDKDTKRRQARLQKELADAAKEPLSVEQDDDI
EVLNDNADASGDAAAAPPIGRISSKRLSQPGVGGLLDSITNIFGLSESPLLGHHSDTARR
RSIPSFPSSQDCADAQAGGNQEVRVPVSALHIFDAHDGEVNAVRFSPGSRLLATGGMDRR
VKLWEVIGDKCEAKSSLTGSNAGITSIEFDSAGTYLLAASNDFASRIWTVDDYRLRHTLT
GHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRNKVCIKTVFAGSSCNDIVCTEQCVMSG
HFDKKIRFWDIRTESIVRELELQGRITALDLNPERTELLSCSRDDLIKIVDLRANAVRQT
FSAQGFKCGSDWTRAIFSPDGSYVAAGSAEGTLYFWNVMTGKVEKILGKHHSSSINAVAW
SPSGTYVVSVDKGSKGVLWSDF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccattataaggccggaggattccccggatggaggatccacatctccagtgaa
ctgaggaggagggatcgagaacagagacaagccttcgaggagctcatcctacaatataac
aggttgcttgaaaaatctgaccttcagtccgttttggctgaaaaactacaggcggagaag
tatgatctactgagccgacatgacaccagcccaggtccagatggaatgcgtaatgatgcg
atactacaagatatggctcagatgaggataaaacaccaggaggagctgacagatctccat
aaaaagcgtggagagctggctcagacggttatagaactgaacaaccagatgaatcagaag
gacaaagaaatccaggctaacaaagagacgatagaggactatatgcgttccattaacggt
ctggagacagagtgtcaagaattaagaaataaactgcaagaactggagcgagtcaatcag
accttaaaagacgaatacgacgccctgcagataacctttaacgctttggaagaaaaactg
cgaaaaaccactgaggataaccaggagcttgtaacccgttggatggctgagaaagctcag
gaagctaatcgtctcaatgcagaaaatgataaagacacgaagaggagacaggcacgactt
cagaaggaactggctgatgctgccaaggaacctctgtctgtggagcaagatgatgatata
gaggtgttaaatgataatgctgatgcctcgggggatgctgcagcagcaccaccaattggg
cgaatctccagtaagagactctctcagcctggcgtaggaggccttctggattctatcact
aatattttcggcctgtctgagtctcccctcttgggtcatcattctgacactgccaggaga
cggtctataccctcctttccatcatcccaagactgtgcagatgctcaggctggtgggaat
caggaagtacgagttccagtttctgctctccacatatttgatgcccatgatggagaagtt
aatgctgtccggttcagcccaggctctcggttattggcaacaggcggaatggacaggcgg
gtgaaactgtgggaggttattggagataaatgcgaggcaaagagttcgctaacggggagc
aatgctggaattactagtatagaatttgatagtgctggcacctacctattagctgcatcc
aatgattttgcgagcagaatttggactgtagatgattaccgacttcggcacaccttaact
ggacatagcgggaaggttttgtctgccaaattcttactagacaatgctcgaattgtttct
ggtagccatgatcggacgttaaaactctgggacctgcgcaataaagtctgtattaagact
gtgtttgctggatccagttgtaatgatattgtctgtacagagcaatgtgtgatgagcggt
cactttgacaaaaagatcagattctgggatataagaaccgagagtatagtacgggagctg
gagcttcaaggaaggatcactgctttagatctgaaccccgaaagaacagagctgctcagc
tgctctcgagatgatctcatcaaaattgtagacctgcgtgccaatgctgttcggcagact
tttagtgctcagggtttcaagtgtggatcagattggactagagctatttttagtccggat
ggtagctatgtggctgctgggtctgcagaaggaacgttatacttctggaatgtgatgact
gggaaggtagagaagatccttggaaagcatcatagttcgtccattaatgctgttgcctgg
tctccctctggtacctacgttgttagtgtggataaaggaagcaaaggagttttatggtct
gacttttga
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integrated database retrieval system
