Rana temporaria (common frog): 120936581
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Entry
120936581 CDS
T07929
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03082
ATP-dependent chromatin remodeling
rtem03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120936581 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120936581 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtem01009
]
120936581 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120936581 (SMARCB1)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120936581 (SMARCB1)
Protein phosphatases and associated proteins [BR:
rtem01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120936581 (SMARCB1)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120936581 (SMARCB1)
SWI/SNF complex
120936581 (SMARCB1)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120936581 (SMARCB1)
PBAF complex
120936581 (SMARCB1)
SWI/SNF complex
120936581 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
120936581
NCBI-ProteinID:
XP_040204983
LinkDB
All DBs
Position
1:211584590..211614739
Genome browser
AA seq
391 aa
AA seq
DB search
MLSAAGPLLVDGKMIMALSKTFGQKPVKFQLEEDGDFYMIGSEVGNFLRMFRGSLYKRYP
SLWRRLATVEERKKIVASSHGKKYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSIST
EPPTYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRLGRDKKRTFPLCFDDHDPA
VIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFV
PAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFA
LKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLE
TLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgctcagtgcggcgggcccgttgctggtggacggcaagatgattatggcgctaagtaaa
acgtttgggcagaagccggtgaaatttcaattggaggaagatggcgacttctacatgatt
ggctcagaggtggggaatttcctgcgcatgtttaggggctcactgtacaaaaggtacccg
tctctctggagacgcttggccactgttgaagaaaggaagaagattgtcgcctcctcgcat
gggaagaaatatcatggatacacaacattagctactagtgttactctactgaaagcttca
gaagttgaagagatcctcgatgggaacgatgagaaatacaaagctgtttccattagcaca
gagcctccaacctacctcagggaacaaaaagcaaagcgaaacagccagtgggttccaaca
ctgcccaacagctcccatcacttagatgctgtgccctgttcgactactattaacagaaat
cgcttgggtcgtgacaagaagaggactttccctctttgttttgatgaccatgatccagct
gttattcatgaaaatgcttctcagcctgaagtactagttcccatcagattggacatggaa
atagatggacagaagttgcgagacgcctttacctggaacatgaatgagaagttaatgact
ccagaaatgtttgcagagatcctctgtgatgatttagaccttaacccccttgcttttgtc
ccggctattgcttcagcgatccgtcagcagatagaatcttatcccactgacagcatactg
gaggatcagtctgatcagagagtcattatcaagctgaatatccacgttgggaacatttct
ttggtggaccagtttgagtgggacatgtcggagaaggagaattcaccagagaagtttgca
ctgaaattatgttctgagcttggtttgggcggggagtttgtcaccactatcgcatacagc
atccgcgggcagctcagctggcaccagaagacatacgcattcagtgaaaaccccttgcca
actgtggagattgccatccgaaatacaggtgatgcagaccagtggtgccctcttctggag
acccttacagatgctgaaatggaaaagaagatccgtgatcaggacagaaacaccaggcgt
atgagacgtcttgccaacactgcaccggcctggtaa
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