Rana temporaria (common frog): 120936633 Help Entry 120936633         CDS       T07929                                  Symbol XRN1 Name (RefSeq) 5'-3' exoribonuclease 1   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism rtem  Rana temporaria (common frog) Pathway rtem03008   Ribosome biogenesis in eukaryotes rtem03018   RNA degradation Brite KEGG Orthology (KO) [BR:rtem00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     120936633 (XRN1)   09123 Folding, sorting and degradation    03018 RNA degradation     120936633 (XRN1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:rtem03019]     120936633 (XRN1)    03009 Ribosome biogenesis [BR:rtem03009]     120936633 (XRN1)    03016 Transfer RNA biogenesis [BR:rtem03016]     120936633 (XRN1)    03036 Chromosome and associated proteins [BR:rtem03036]     120936633 (XRN1) Messenger RNA biogenesis [BR:rtem03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      120936633 (XRN1)   mRNA degradation factors    5'-3' decay     5' exonucleases      120936633 (XRN1) Ribosome biogenesis [BR:rtem03009]  Eukaryotic type   Pre-60S particles    RNases     120936633 (XRN1) Transfer RNA biogenesis [BR:rtem03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     120936633 (XRN1) Chromosome and associated proteins [BR:rtem03036]  Eukaryotic type   Gene silencing    piRNA pathway     120936633 (XRN1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Motif Other DBs NCBI-GeneID:  120936633 NCBI-ProteinID:  XP_040205055 LinkDB All DBs Position 4:144091683..144167659 Genome browser AA seq 1259 aa AA seqDB search MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRITEDKI FSDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKAVEKGE VLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKTWEGVTVYLSGHETPGEGEHK IMEFIRSEKTKPDHDPNTRHCLYGLDADLIMLGLTSHEVHFSLLREEVRFGGKKNQKRIS APEETTFHLLHLSLMREYVGYEFSSVKDKISFEYDVERIIDDWILMGFLVGNDFIPHLPH LHINHDALPLLYRTYISVLPEIGGYINENGYLNLVHFEKYLKKLSAFDREHFNEVFVDLK WFESKVGNKYLNEAAGQAAEEARNCKRKKSKVVDDSLCLIALENNGEDDSKCLDEDAEDE DLFETEFRQYKRTYYMTKMGVEVVSDEFLADQAECYVQAIQWILHYYYHGVQSWSWYYPY HYAPYLSDIQNISHLKLKFDFAKPFMPFEQLLAVLPAASKDLLPQAYQSLMIGEDSPIID YYPQDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMEACNKQLTEEEKNRNRHSECFMYWF EKQDGFKYSSPWPEKFQSIECCRARSKSISLDAWHVDMVDNKITNVNKSALYFCGFPTLK HIKHTFSLKKTGVQVFQQSSRGENMILEIVVDEDSNNINVESVASAVLGKSVFVNWPHLE EARVVAVSDGDVKFYLEEPPGIQKLYTGEAVPPTKLVYHSDKERNIWVKELQGISEHYQR RKGVIINDTFVLLYAQLLTGRRYQLTQNGEVYLEKQWSKQVLPFVYQAVVKDITAFESGF SHFKTLGELYSPGITVFMLGIPYYGSMGEVQDSSDVLSENRVRVLFNIPCEPQLDALIQN QHKFSVKYNPGYVLASRLGVNGYLVSRFSGSIFIGRGSKRNPHGEQKANVGLSLKFVKKN EEVPGYTKKVGTEWTYSSAVEQLLGEYIERYPELFTYVSKNSHDDVFYEDDIWSGEDENG AEKVQEIVSWLKAHPVSLLSRSSCDLQILDSAIVEKIEEEVANCKTRKGNKKVRVTVKPH LLFRSLEQQHGVVPDRDAEFRLFDRVVNVRESFSVPVGLRGTVIGIKGAERDSDVLLEVL FDEEFPGGLIIRCSQSKGYRMPTSALINLSHGVRTENGGQKVTSVVKPQSSTNHHTSYSP ELYAGGSQKGHLGALNHSPRSLFVPTRVRSLMTRWVTAVFFLKMLVACLCCCSSDFSSF NT seq 3780 nt NT seq  +upstreamnt  +downstreamnt atgggtgtccccaagttctatcgctggatctccgagcggtacccgtgcctcagcgaggtg gtcaaagagcatcagatcccagagttcgacaatctgtacttggacatgaatggcatcatt catcaatgctctcacccgaacgacgaggatgtgcactttcgaattacagaagacaagata ttttcagatatatttcactacctggaagttctgttccgcattatcaagccaaggaaggtt ttcttcatggctgtggatggtgttgctcccagggcaaaaatgaaccagcagcggggaaga cgatttagatcagcaaaagaggcagaagaaaaaataaagaaggcagtagaaaaaggggaa gttttgccaacagaagcaaggtttgactccaattgtattactcctggaactgaatttatg gctcgcttacatgagcatctgaagtattttgtaaatatgaagatttccacagacaagaca tgggagggtgtaactgtctacttgtctggtcatgagactccaggagaaggcgaacataaa attatggagtttatacgttctgagaaaacaaaaccagatcacgatccaaatacaaggcat tgcctttatggattagatgcagatttgataatgcttggtttaacaagccatgaagttcac ttttctcttctaagagaagaggttcgctttggtgggaagaagaatcaaaaaagaatttct gcaccagaggaaactacatttcacctccttcacttgtctctaatgagagaatatgttggt tatgagttttcatccgtgaaggacaagatctcctttgaatatgacgttgaaaggataatt gatgactggattttaatgggatttcttgtgggcaatgattttattcctcatctacctcat ttgcatattaaccacgatgcactgcctctattgtacagaacatatattagtgtcttacca gaaattggaggttacattaatgagaatgggtatttgaacctagtccactttgagaaatat ctcaaaaaactttctgcctttgaccgagagcacttcaatgaagtctttgttgacttaaaa tggtttgaaagcaaagtgggcaataagtacctcaatgaggctgcaggccaagctgctgaa gaagctcgaaactgtaagagaaaaaagagcaaggttgtcgatgactctctctgcttaatt gcattagaaaacaatggagaagatgattctaaatgtttagacgaagatgcagaagatgaa gatttatttgagactgagtttcgacagtacaaaagaacttattacatgacaaaaatggga gtggaggttgtgtcagatgagtttctggccgaccaagctgaatgttatgtccaggctata cagtggattttgcactattactaccatggggtccaatcctggagctggtattacccctac cattatgcaccatacttatctgatattcagaatatcagtcacttgaaactgaagtttgat tttgcaaaacctttcatgccatttgaacagctactcgctgtcttacctgctgctagtaaa gatttgctgcctcaggcctatcagagcctaatgattggtgaagactctcccataatagat tactatccccaagattttaaaactgacctcaatggaaaacaacaggagtgggaagcggtg gtattgattccatttattgatgagactcgcctgctagaagccatggaggcctgtaataag cagctgactgaggaagagaagaatcgcaatagacacagcgaatgcttcatgtactggttt gaaaagcaagatggcttcaaatacagctctccctggccagagaaatttcagagcatcgag tgctgccgggcaaggagtaagagtatttcactggatgcatggcacgtggatatggttgat aacaaaatcacgaacgtgaacaaaagcgcactgtatttttgtggcttcccaactctaaag cacatcaaacacacgttctctctgaaaaaaacaggagtgcaggttttccagcagtctagt agaggagaaaatatgatattggagatagtggttgatgaagactctaataatattaacgtg gaatctgtggcttcagcagttcttgggaaatctgtatttgtcaactggccccaccttgaa gaagcacgcgttgttgcagtgtcggatggagatgtgaaattttatttggaagaacctcct ggaattcagaagctttacactggtgaagctgtaccacctacaaaattagtttaccattct gacaaggaaaggaacatctgggtgaaggaactacaaggaatctcagaacattaccaaaga agaaaaggagttatcatcaatgacacatttgtgctgctgtatgctcaactgcttactggt cgtcgttatcagttgacacaaaatggagaggtttacctggagaagcagtggtccaagcag gtactcccctttgtataccaggcagttgtcaaggacataactgcctttgaatctggtttc tcccattttaagacacttggggagctgtactcacctgggattacagtcttcatgctcggc ataccctactatgggtcaatgggagaggttcaagactcttctgatgttctcagtgagaac agagttcgtgttctatttaacattccctgtgaaccgcagctagatgccttaatacagaac cagcataaattttctgtaaaatataaccctggatacgttttggcaagtcgtcttggagtg aatggataccttgtttccaggttttcaggaagcatttttattggcagaggctccaaacga aatccacatggagagcaaaaagcaaatgtaggcttgagtttaaaatttgttaaaaagaat gaagaagttccaggctataccaagaaagttgggactgaatggacctattcctctgctgtg gaacagcttctgggtgaatatatagagaggtaccctgaattgtttacatacgtttcaaaa aacagccacgatgatgtattctatgaggatgatatctggtcaggagaggatgaaaatggc gcagagaaagttcaggagattgtctcctggctaaaggctcatcctgtcagcctgctatcc cggtcatcgtgtgatttacaaattctggattctgcaattgtggagaaaattgaagaggag gttgcaaattgtaagaccaggaagggcaataaaaaggttcgagtgactgtgaaaccacat ttattgtttcggtcacttgaacagcagcatggggttgttccagacagagatgctgagttt cgactttttgaccgcgttgtcaatgtgcgggaaagcttttctgttccagtgggacttagg ggcactgttattggcattaaaggagccgaaagagattcagatgtcctgcttgaagtatta tttgatgaagaatttcctggaggcctcattataagatgttcccagtctaaaggttatcgt atgccaaccagtgccttaattaatctttctcatggtgttcgcacagaaaatggagggcag aaggtaacttctgtagtaaaaccccaatcgtccactaatcaccatacttcttattcccct gaattatatgctggaggatcacaaaaaggacatctgggtgccctcaaccattctcctcgt tccctctttgttcccacgcgggtaagatcattgatgactagatgggtgactgctgttttt tttctgaaaatgctagttgcctgtctgtgctgctgttcctctgactttagttccttctga

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