Rana temporaria (common frog): 120937041
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Entry
120937041 CDS
T07929
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rtem00535
]
120937041 (COL12A1)
Proteoglycans [BR:
rtem00535
]
Extracellular matrix (ECM) proteoglycans
Others
120937041 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
NDNF
DUF4998
Laminin_G_3
Copine
Imm2
Motif
Other DBs
NCBI-GeneID:
120937041
NCBI-ProteinID:
XP_040205896
LinkDB
All DBs
Position
4:complement(230108790..230353894)
Genome browser
AA seq
3123 aa
AA seq
DB search
MKTRLSSAVTALCAVLLLSSIEAEVGPPTDVNFEIVNESTVRMSWQRPAERIRGYKITIV
PTTDGVAKELDLPASATQTVLTELVPDVEHVVTILSYDELEESLPVFGQLTITTGGRVLT
EEKKFVTSDSPRCSISAIADVVFLVDGSWSVGRTNFKYILSFMSSLASAFDIGEDKTRVG
VVQYSSDTRTEFNMNRYYNQAELLAAIKRIPYKGGNTMTGEAIDYLRKNAFVQTAGARKG
FPKIAIIITDGKSQDEVEIPAKELQNLGVEVFTLGIKAADAKELKQMASLPSLKHVYSVP
NFDAIVQVQNEIISQVCSGVDEQLSDITSGDEVVDPPSDLFVTEISSKSMKITWKASPSQ
ITGYRIQLTPMLAGSKSQAVNVGPKTTSHILKDLSPDTEYQINVFAMKELTASEPISTLE
KTQAVKIRVECSGGVDIKADVVLLVDGSYSIGVANFAKVRAFLEVLVKSFDISPNKVQIS
LVQYSRDPFTEFALNKYDKIEDILHAINTFPYRGGSTNTGKAMTFVREKVFVENRGARSN
VPRVMILITDGKSSDAFKDPAQKLRSSDVEIFAVGVKDAVRTELESIASPPADTHVFTVE
DFDAFQRISFELTQSICLRIEQETEKIKRKSLTPASNLEFSEVTSNSFRVSWSPGADDVL
SYRVQYKVAVGGEEFIFTVPVPTTTTVLTNLFPETTYAVSVEAEYEEGWSTPLNGEETTL
EVKGAPRNLIVSDETTDSFKVGWSPAPGNVLRYRIDYRPVAGGERKEVTVPGNERATTLQ
RLLSDTKYHVSVTPEYHSGPGKALKGNGATEEILGEPKNLRVSDPTTSSLKLSWDKAPGK
VLNYLVTYTPATGGEPKEVTLRGNITSTVLKQLDAGTTYSLSVNPLYRSGAGSALNGEGT
TLDERGSPRNLITKDITDTTIGASWTAAPGMVRGYRVAWKSLFDDEAGEKTVPGDVTNAV
LEYLKPETKYKISVFANYKSGEGAPLEGDATTDVSPNAKTLTVSDETENTMKVTWQPAPG
NVVNYRVIYRPRAGGRQIVAKMPGSATTTVLRRLQPLTTYDITVVPVYKSGDGKARQGEG
TTASPFKSPRNLKTSDPTISTFRVTWEPAPGEVKGYKITFYPIGDERHLGEMTVGPYDNT
VVLEELRAATSYKVNVVGVFDQGMSAPLVGEEMTTQSDAPDVHVNAGLECKTNAAADIVL
LVDGSWSIGRPNFRTVRSFISRLVEVFEIGPERVQIALSQYSGDPRTEWQLNSHPTKKSL
MDAVANLPYKGGNTLTGLALNFILQNNFKAGVGMRPKSRKIGVLITDGKSQDEIITPSKR
IRDQGIELYAIGIKNADENELKEIATDPDDVYVFNVQDFNLLTNIVDPLTNNLCNSVKGG
GDDLEAPSDLRTSEPTPRSFRVSWAPPSHSVDRFRVEYYPVSGGRPQEVIVNRNDRTTVL
VDLKPETEYVVKVYSVVEGESSEPLVGQETTLPIPSVRNLNIYDIGTTTMRARWEAASGA
TGYLLLYEPVNATVPSTEKEMRVGPSVTDVRLEELFPNTEYTLTVYALFDELTSDPLTAQ
EVTLPVQGVGNIRLRDITHSSMNVFWDPAPGKVLKYIVRYKTEEEEEYKEVEVDGKRTTT
PLTDLFSQTMYDVSVTAVLDVGKSQPRHTQGTTAPVPAPTNLRFSEITTQSFRGTWDHGA
PDVALYRITWQPTGRPGQKKETIVDGDKNSLVFEELDADTPYDVLITAVYPDESESEDLM
GNERTLPVIIITTTPTPNGPQNLQVFNATSSSLTVRWDPANGKVLRYKIFYEPTNGDGVK
QTQTVGGSKNSVVLQKLQPDTPYTITVASQYAEKEGGRISGRGKTKPLNTVKNLRVYDPT
TSTLNVRWEAAEGNVRQYKVFYVPTAGGSEEVTTVPGNTIYTVLRGLQSDTPYTVTVVPV
YSEGDGGRMSETGRTLVRGTAKNIQVYNPTTNTLNVRWDPAPGLVQQYKVNYSPLYATSP
PLSVVVPSNTHNLLLERLNPDTPYSVNVAAMYPDGEGDPSAAEGKTLPRSGPKNIRVFGE
TTNSLSVSWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVVLQPLLPDTPYKITVV
AVYGDGDGGQLTGNGRTVGLLAPRNLQISDEWYTRFRVSWDRATSPVLGYKLVYQPHDAD
ESVEAFVGDVNSYTLQNLNPGTTYDVKVYAQYDTGLSGPLSGPGTTLYLNVTDLTSYQVA
WDSFCVRWTPHRAATSYRVKLNPVDGSRGQEITVTGAESSNCFTGLNPDTDYSVTVFVQT
PNLEGRGVSTKERTLIKPTEAPTEAPAPPPPPTIPPAREVCKGAKADIVFLIDSSWSIGD
DNFNKVRQFIFNTIGAFDVINPAGIQVSFVQFSDDAQTEFKLNTYAEKSQALGALANVRY
KGGNTKTGKALKFVREKVITVENGMRRSVPKVLVVVTDGRSQDDVKKYAMDIQHSGFSVF
VIGVADVDYNELRDIGSKPSDRHVFIVDDFDAFEKIEDNLITFVCETATSTCPLIYLDGY
TSPGFRMLEAYNLTEKTFASVQGVSLQPGSFNSFPAYNLQKDAFLSIPTSELHPEGLPHS
YTIILLFRLLPETPNEPFSIWQVTDKGYKPQTGVTLDVPKKALTFFNKGASGEIQSVTFD
GDEIKKLFYGSFHKVHLVVSTQYVRIYVDCQEVAEKPIKEPGNITTDGYEVLGKLTKGDK
KSAPFLLQMFDIVCTVTWTSRDRCCDIPAMRDEAKCPALPHACTCAQDSIGAPGPPGPSG
IPGSKGPRGDRGTDGPTGPPGQRGEPGLVGQQGPPGPQGPPGLSIPGEPGRQGQKGDPGD
PGLPGRMGSPGVTGPSGPMGPPGSRGFTGKDGAVGPRGPPGPMGTPGPQGVPGPSGLPGK
QGDNGLPGSPGQKGDKGDRGDIASQNMMRSVARQVCEQMINSQMSRFNQMLNQIPNDYYS
NRNQPGPPGPPGPPGNAGMRGEPGPGGRSGFPGTPGAQGPPGERGIPGEKGERGNSGIGS
QGPRGLPGPPGPPGESRTGPPGSTGSTGPPGPSGRPGNQGIRGPVGPSGYCDASLCASIP
YNGQGYPEPYQPESGPIDPDSQPYVVQIPPERPDDEDYGHDMHPDYAEHMRWRRSLRKNV
VKS
NT seq
9372 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacggctttccagtgcggtgacagcactgtgtgctgtcctgctcttatcatct
atagaggcagaagttggtcctcctacggatgtaaactttgaaatagtaaatgaaagcaca
gttcgaatgtcatggcaaaggccggctgagaggataagaggttacaagattactattgtt
ccaacaactgatggagttgcaaaagaactagatcttccagcttctgcaacccaaactgtg
ttaacagaacttgtaccagatgttgaacatgtcgtcacaatcctttcctatgatgaattg
gaggaaagtttacctgtgtttggccaacttacaattacaacaggtggccgcgtgctgaca
gaagaaaagaagtttgtaacgtcagattccccacggtgttctattagcgcgattgccgat
gtggtattccttgtggatggctcttggagtgtggggagaacgaacttcaagtatattctt
agcttcatgtcttctttggcttcggcatttgacattggagaagataagacgagggttggt
gttgtccaatacagctcagacaccaggacagagtttaatatgaacagatattacaaccaa
gctgagcttctggcagctattaaaagaataccttacaaagggggaaatacaatgacaggt
gaagccattgactacttgagaaagaatgcctttgtccaaactgctggggccagaaaagga
tttccaaaaatagcaataatcattactgatgggaaatctcaagatgaagtagaaattccc
gcaaaggaacttcagaacttaggagtagaagttttcacattgggtataaaggcagcagat
gcaaaagagctaaaacaaatggcctccttaccatctctaaaacacgtttacagcgttcct
aactttgatgctattgttcaagtacaaaatgaaattatttctcaagtttgctctggtgtt
gatgagcagctcagtgatatcactagtggggatgaagttgtggatcctccttcagattta
tttgtaacagaaatttcttccaaatctatgaagatcacctggaaggcttctccaagccaa
atcacaggctacagaattcaacttactccaatgctggcaggaagtaaatctcaggctgtg
aatgttggccctaaaaccacaagccatattctgaaggatctttccccagatacagagtat
cagattaatgtatttgcaatgaaagaacttacagcgagtgagccaatctcaacactggaa
aaaacccaggcagtgaaaattagagtggaatgttccggtggtgtggatataaaagctgat
gttgttctccttgttgatggctcttacagtattggtgttgccaactttgctaaagtcaga
gccttcttggaagtgttagtaaaaagctttgacatctcacccaacaaagtgcagatcagt
cttgtacagtacagcagagatccatttacagagtttgcactgaacaagtatgacaagatt
gaagatattcttcatgcaataaatacctttccatatagagggggctctaccaacacaggc
aaggccatgacttttgtcagggaaaaggtgtttgttgagaacaggggggcaagatccaat
gtgcccagagtcatgatacttatcactgatggaaagtcatctgatgcctttaaagaccca
gcccaaaaactcagaagttccgatgtagaaatatttgctgttggtgttaaggatgcagtg
agaactgaactggaatcaatcgcatcaccaccagcggacacccacgtttttactgtagaa
gactttgatgccttccaaagaatctcttttgaattgacacagtctatttgtctgagaatt
gagcaagaaactgaaaaaataaagcggaaatctctgacaccagcatccaatctagagttt
tctgaggtcacttccaacagtttccgagtaagctggtctccaggagctgatgacgtttta
tcctaccgtgtccagtacaaggttgctgttggtggggaagaatttatttttactgttcca
gttccaactactactactgttcttacaaatctgtttcccgaaactacatacgctgtcagt
gttgaggcagaatatgaggaaggatggagcactccactgaatggggaagaaacaactcta
gaagtaaaaggagcacctagaaatcttatagtaagtgatgagaccactgatagttttaaa
gttggctggtctccagctcctggaaatgttttgagatacagaattgactatcggccagtt
gctggtggagaaagaaaagaagtaacagtaccaggaaatgaaagagcgacaacactacag
cgtcttctttctgacacaaagtaccatgtatcagtcacccctgagtatcattcaggtcca
ggaaaagccttgaaaggaaatggagcaaccgaagaaattctaggagaacctaaaaacctc
agagtttctgaccctacaacatcaagtttaaagctgtcctgggataaagcacctggcaaa
gtgttaaactaccttgtaacctacacaccagcaacaggaggggagcccaaagaggttaca
ctcagaggaaacattaccagtactgtcttaaaacagctggatgctggtacaacatactct
ctatctgtaaatccattatacaggtcaggagctggatcagccctcaatggggaaggaact
actcttgatgaaagagggtcacctcgtaatttaataaccaaggatatcacagacactaca
ataggagcatcatggacagcagctccaggaatggttcgtggttacagagttgcatggaaa
tctctgtttgatgatgaggctggagagaagacggtacctggtgatgtcactaatgcagtt
ttggagtaccttaaaccagaaacgaaatataaaatctcagtttttgctaattacaaaagt
ggtgaaggagcccctctagaaggagacgctactacagatgtgtcaccaaatgcaaagact
cttacagtcagcgatgaaacagaaaatacaatgaaagtcacatggcagcctgctccagga
aatgtggtgaattatcgtgtgatctatcggccaagagcaggcggaagacaaattgttgct
aaaatgcctggctcagccactacaacggtactaagaaggctgcaacctttaactacctat
gatataactgttgtcccagtttacaagtcaggagatggaaaagcaagacaaggagaagga
acaacagcttctcctttcaaatcaccaaggaacttgaaaacatctgatccaactatatca
accttccgagtgacctgggaacctgccccaggagaagtaaaaggatacaaaatcactttc
tatcctataggggatgaaaggcatttgggagaaatgacggttggtccttatgataataca
gtggtactagaagaactcagggcagcaacatcttacaaggtcaacgttgttggagtgttt
gatcaaggaatgagtgcacctttggttggagaagaaatgacaactcagtcagatgcacct
gatgtccatgttaatgctggtttggaatgcaaaactaatgctgctgcagacatagttttg
ctggtagatggttcttggagtattggccgtccaaacttcaggacagtaagatctttcatc
tcacgattggttgaagtctttgagattggccctgagcgagtacagattgcactttcccag
tacagtggagatcccagaactgaatggcagctaaattctcaccccactaagaagtcttta
atggatgctgttgccaatttgccttacaaggggggcaatactcttacaggcttggctttg
aatttcatcttacaaaataattttaaggctggggttggcatgagacctaaatctcgcaaa
attggggtgcttatcactgatggaaaatcacaagatgaaatcattacaccatcaaaaagg
atacgagaccaaggaatagaactgtatgctataggtataaaaaatgcagatgaaaatgaa
ctgaaggaaattgctaccgatccagatgatgtttatgtgttcaatgtccaagacttcaat
ctgctcaccaatattgttgatcctctaacaaataatttgtgtaacagtgtcaagggtggt
ggagatgacctggaagccccttctgacctaagaacatcagaacccactcctcgctccttt
agggtgtcatgggctcccccatctcatagtgtggacagattcagagtagagtattatcca
gtatctggaggcagacctcaagaggttattgttaacagaaatgacagaacaacagtgctg
gttgacctaaagcctgaaacagaatatgttgtcaaagtgtattcagtggtagaaggggag
agcagcgagccactggttggccaagaaaccacattgcccatcccttctgttagaaacctt
aacatttatgacattggaaccacaacaatgagagcaagatgggaagctgccagtggagct
actggatatcttttgttatatgagcctgtcaatgcaactgttccttctacagaaaaagag
atgcgtgttggcccatctgttactgatgtgcgattggaggaattattccccaatacggag
tatacgctgactgtttatgcactttttgatgaacttactagtgacccactcacagctcag
gaagttacattgccagttcaaggagttggaaatataaggctcagagatattacacacagt
tctatgaatgtattttgggatcctgctcctggaaaggtcctaaaatacatagtgaggtac
aaaacagaagaagaagaggaatacaaagaggttgaagttgatggcaaaaggacaactaca
cctttaactgaccttttctcacaaactatgtatgatgtcagtgtcaccgcagtgttggat
gttggaaaatcccagcctcgacatacacaaggcactacagctccagtgccagcaccaacc
aacctccgattctctgagataacaactcaaagcttccgtggtacttgggaccatggagca
cccgatgtggctttgtacaggataacttggcaacctactggacgaccaggacaaaagaaa
gagaccattgtggatggagataagaactctttggtatttgaggagctggatgctgacacc
ccatatgatgttttaattactgctgtctaccctgatgaatctgagagcgaggatttgatg
ggcaatgaacgaacattacccgtaataataattactacaactccaactccaaatggtcct
caaaaccttcaggtgttcaatgcgacatcaagtagcctgacggtgagatgggatcctgcc
aacggaaaagtgttgagatacaaaatattttacgagcctaccaatggagatggtgtaaaa
caaacgcaaacagttggaggaagcaaaaacagtgtcgtgcttcagaaacttcagccagat
actccatacactataactgtggcatcgcagtatgcggaaaaagaaggaggaagaatttcg
ggccgaggaaaaacaaaaccccttaacacggtgaaaaatctcagagtatatgacccaacc
acaagcactttaaatgtccgctgggaggcagcagaagggaatgtccgtcagtataaggtc
ttttatgtcccaactgctggtggatctgaagaagtgactactgttcctggaaatacaatc
tatacagttcttagaggacttcagtctgacacaccctacactgtgacggtagtcccagta
tattcagaaggagatggaggtcgcatgtctgaaactggaaggacattggtgagaggaact
gcaaaaaatattcaagtatataaccccactaccaacacattaaatgtccgctgggatcca
gctcctgggcttgtccagcaatacaaggtcaactactctccattatatgcaacaagtcct
cctctgtctgttgtggtccccagcaacactcacaatttgctgttagaacgcctgaatcct
gacactccttactctgtaaatgtggccgccatgtatcctgatggagagggtgatccaagt
gctgcagaaggaaaaacattacctcgcagtgggccaaagaacattagagtttttggagag
acaactaacagcctttcagtaagctgggaccatgctgacggtccagttcagcagtacaga
atcatctattctccaactgttggtgatcccattgatgaatatacaactgtccctggtcgg
aggaacaatgtggtcctgcagccattgttgccagacactccatataaaatcactgtggtt
gcagtctatggagatggtgatggaggacaattaacaggaaatggaaggacagtgggtctg
cttgcaccaaggaacttgcaaatttctgatgaatggtataccagattcagggtatcttgg
gatagagctacctctccagttcttggatacaagcttgtgtaccaaccacatgatgctgat
gaatccgtagaagcttttgttggtgatgtgaattcctacacgctgcaaaacttgaatcct
ggaaccacctacgatgtcaaggtatatgctcagtatgacactggactaagcggaccactc
tcagggcctggaacgacattgtatttgaatgtgactgatctgacaagctaccaggttgca
tgggactcattttgtgttagatggactcctcatcgagctgcaacttcatacagagtcaaa
ctgaatccagttgatggatcacgtgggcaagaaataacagtgactggcgctgagtcatca
aactgtttcactggactgaaccctgacacagattactcagtcacagtttttgtgcaaact
ccgaaccttgagggaagaggggtttcaaccaaagaacgaacattgataaagccaacagag
gcacctacagaagctcctgctcctcctccacctcccacaatacctcctgcacgtgaagtg
tgcaaaggtgcaaaagcagatatcgtttttctgattgacagctcctggagtattggcgat
gataacttcaacaaagtacgccagttcatttttaataccattggagcatttgatgtcatc
aatccagctggaatccaggtatctttcgtgcaattcagtgatgatgcccaaactgaattt
aagcttaatacttatgcagaaaaatcacaagctctgggagctcttgctaatgtccgctac
aaaggaggaaacacaaagacaggaaaagcacttaagtttgtccgtgaaaaggttataact
gtggaaaatggaatgagacggtctgttcctaaggtgcttgttgtggtcactgatggaaga
tctcaagatgatgtgaaaaagtacgccatggacatacaacactctggtttcagtgttttt
gtcatcggagtagctgatgtggattataatgagctccgtgatataggcagtaaaccaagt
gatcgccatgtattcattgtcgatgactttgatgcttttgagaagattgaagataatctg
atcacattcgtgtgtgagacagcaacctcaacttgcccacttatttaccttgatggatac
acatcaccgggctttaggatgttggaagcctacaatctcacagaaaagacgtttgcatca
gtccaaggtgtctccttacaacctggttcgtttaacagcttcccagcatataacctccag
aaagatgctttcctctctatacctacctcagaactgcatcctgagggtctaccacattct
tacacaatcatcttattgttccgcctgctccccgagacccccaatgaacctttttctatc
tggcaggttacggacaagggttataagcctcaaactggagtgaccctggatgtaccaaag
aaagctcttactttcttcaacaaaggagcatcgggagagattcagagtgtaacctttgat
ggtgatgaaatcaagaaactcttctatggaagcttccacaaggttcatcttgtggtatct
acacaatatgtgagaatttatgttgactgccaagaagtagcagagaaaccaatcaaagaa
cctggcaatataacaacagatggatatgaagtgcttggaaaactgacaaagggggacaaa
aaatctgctccgttcctgctccagatgtttgacattgtgtgtactgtaacctggacaagt
agagatagatgctgtgatatccctgcaatgagagatgaagctaaatgcccagcattacca
catgcttgtacttgtgcacaagacagtattggagctccgggaccaccaggcccatctggt
attcctggtagcaaaggtcccagaggtgataggggtacagatggacctacgggcccacca
ggacagcgaggtgaacccggcctagttggccaacaaggcccacctggtccgcaagggcca
cctggactttctattcctggagagcctggccgtcaaggacaaaaaggtgatccaggtgat
ccagggttaccaggaaggatggggtctcctggggtaactggaccatctggacctatggga
ccaccaggatcaaggggcttcactggcaaagatggagctgtaggacctagaggacctcca
ggaccgatgggaacaccaggacctcaaggtgtgccaggtccaagtggtctaccaggaaag
caaggagataatggcctaccaggctcaccaggccaaaagggagataagggtgacagggga
gatattgcttctcagaatatgatgagatcagtggcaagacaagtttgtgaacaaatgata
aacagtcaaatgagcagatttaaccaaatgttgaaccagattccaaatgactattattcc
aatcgcaatcaacctggacctcctggtccacctggtcctccaggcaatgctggtatgaga
ggtgaacctggacccggaggaagatctggattcccaggaacacctggtgctcaaggacca
cctggagaaagaggaataccaggagaaaaaggggaaagaggtaattctggaattgggtct
caaggacccagaggtctccctggaccaccaggaccaccaggtgaatccagaactggacca
ccagggtctacaggctctacagggcctccaggaccttctggccgaccgggtaaccaagga
attaggggtcctgttggtccatctgggtattgtgacgcttcactatgtgcaagtattcct
tacaatggccaaggatatccagaaccttatcaacctgaaagtggaccaattgatcctgac
agtcaaccctacgtagtccaaataccaccagaaagaccagatgatgaggactatggacat
gacatgcatccagactatgctgaacatatgcgatggagaagatccctaagaaagaatgta
gtgaaatcgtaa
DBGET
integrated database retrieval system
