Rana temporaria (common frog): 120937339
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Entry
120937339 CDS
T07929
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120937339 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120937339 (HBS1L)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120937339 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
120937339
NCBI-ProteinID:
XP_040206409
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Position
4:complement(295493767..295668181)
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AA seq
687 aa
AA seq
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MARHRNVRGYNYDEDFEDEDMFGQSVEDDYCISPATAAQFIYSKRDRHSSFTEPLEEEEE
EEHNDEELEKQKASNIALSSVDQARLFSCLEHMREVLGETVLEQVMIDAALKCQFDVSKA
LELVFKQDSNTNTSTEPVSQDLLSTGKPAKGRSRDLTSMEAQNEIVPKIAKMTVSGKKQK
MGFNIPSTASEVNGQAVPLSAKSQHMDDIVEESESTVPLPTQINTSQGSDELNAISQVKS
SGKSKQKINVKEELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGHVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERQRGVTMDVGMTKFETKSKVITLMDAPGHKDFIPNMIT
GAAQADVATLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWQQDR
FREVTSKLGHFLKQAGFKDSDVFYVPTSGLSGENLAKCSQIPDLTSWYKGPCLTDQIDSF
KAPQRSTDKPFRLCASDVFKDQGSGFCVTGKIEAGYIQTGDRILAMPPNETCTVKGITLH
DEAVDWAAAGDQVSLTLTGVDIIKINVGCVFCSQNEPIKACTRFRARVLIFNFDVPITQG
FPVIIHYQTVSEPATIRKLVSVLHKSTGEVVKKKPKCLTKGMNAVIELQTQRPVALELYK
DFKELGRFMLRYSGSSIAAGVVTEIKD
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcgagacaccggaacgtacgggggtacaactatgatgaggattttgaggatgaagat
atgtttggacagtctgtagaagatgactattgtatttcaccagccacagctgctcagttc
atatattctaagcgggacagacactcaagctttactgagcctttagaagaggaggaggaa
gaggaacacaatgacgaagaactggaaaaacaaaaggcttctaatattgctttaagttca
gtagaccaagctcgtttattctcatgcctggagcacatgagggaagtcctgggagagact
gttttagagcaagttatgattgacgcggcattgaaatgtcagttcgatgtctccaaggcc
cttgaacttgtgttcaaacaggacagcaacaccaacacaagcaccgaacctgtgagccaa
gacttgctctccactgggaagccagcaaaaggcagatcaagagacttgacttctatggaa
gcacagaatgaaattgtccctaaaattgccaagatgactgtctctggaaagaagcagaaa
atgggatttaatattccaagcacagcatctgaggtaaatggacaggctgttcctttgtct
gcaaaaagccagcatatggatgacattgtggaggaatctgagagcaccgttccattaccc
acacaaataaacacatcacagggctctgatgaacttaatgccatatctcaagtaaaaagt
tcgggaaaatccaagcagaaaattaatgttaaagaagagctagaaaagagacaaggagga
aaacagctgctaaaccttgttgtaataggccatgttgatgctgggaaaagcacacttatg
ggtcatctattatatctcttgggacatgtgaacaaacgaaccatgcacaaatatgagcaa
gagtccaagaaagcaggaaaagcgtcttttgcatatgcttgggtgcttgatgagacaggc
gaagagaggcaaagaggagtgactatggatgtaggcatgaccaaatttgaaacaaagtcc
aaagttattactttaatggatgctccagggcacaaggattttatcccaaatatgattaca
ggggctgctcaagctgatgtggccactttggttgtagatgccagccgaggggaatttgaa
gcaggcttcgaagctggtggacagacacgtgagcatgcactgctggtccgctctcttggt
gtaactcagcttgcagtagcagtcaataaaatggatcaggttaactggcaacaagatcga
tttcgggaagttactagtaagcttgggcactttctgaaacaagctggatttaaggacagt
gacgtattttatgttcctaccagtggcctcagtggagaaaatctggccaaatgtagtcaa
atacctgatctgacaagctggtataaaggaccgtgccttactgaccaaattgattccttt
aaagccccacagcggtccacagataaaccctttagactgtgtgcatcagatgttttcaaa
gatcaaggctctggattttgtgtgactggcaaaatagaagctggctacatacaaacaggt
gaccgcatactagccatgccacctaatgaaacatgcacagtaaaaggaatcacattacat
gatgaagcagtcgactgggccgcggcgggagatcaagttagtctcactttgaccggcgtg
gatatcatcaaaataaatgtaggatgcgtgttttgcagtcaaaatgaacctatcaaagcc
tgtacccgtttccgagccagagttctgatctttaactttgatgtccctataacccaaggt
ttcccagtaatcatccactaccaaactgtaagtgagcctgccactatcaggaagctggtc
agtgtcctacacaagagcacaggggaggttgtaaagaaaaagccaaaatgtctaacaaaa
ggaatgaatgctgtaatagagctacaaacgcagagacctgttgctttagaattatacaaa
gactttaaagaacttgggaggttcatgttacgttacagtggatcatccatagctgctgga
gttgtcactgagataaaagattga
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