KEGG   Rana temporaria (common frog): 120937436
Entry
120937436         CDS       T07929                                 
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
rtem  Rana temporaria (common frog)
Pathway
rtem03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    120937436 (TAF5L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtem03021]
    120937436 (TAF5L)
   03036 Chromosome and associated proteins [BR:rtem03036]
    120937436 (TAF5L)
Transcription machinery [BR:rtem03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     120937436 (TAF5L)
   Coactivators
    SAGA/TFTC/STAGA complex
     120937436 (TAF5L)
Chromosome and associated proteins [BR:rtem03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     120937436 (TAF5L)
    STAGA complex
     120937436 (TAF5L)
    TFTC complex
     120937436 (TAF5L)
    SAGA complex
     120937436 (TAF5L)
    SLIK complex
     120937436 (TAF5L)
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd EIF3I TFIID_NTD2 WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_SCAP ANAPC4_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_WDR41 NBCH_WD40 Beta-prop_SPT8 Beta-prop_DCAF4 RMC1_N Tricorn_2nd Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_WDR19_1st DUF7165 WD40_RFWD3 PEP5_VPS11_N PROPPIN Mala_s_1-like Cytochrom_D1
Other DBs
NCBI-GeneID: 120937436
NCBI-ProteinID: XP_040206613
LinkDB
Position
4:319483258..319518711
AA seq 590 aa
MKRVRAEQIQLAVTCYLKRRHYIDIEGSLKQGLRLCQTAEEMAANLTVQAESSCANAVSS
APCQVDPQQYELQFARLRNFISEENCPYSQNVTSLLYPLFVYLHLDMVQNSLKSMVDSFY
SRFHGMFLHHPAQKDIIEQLQTTMTMQDIHSNIKLRAFLDNKYVVRLQEDSYNYLLRYLQ
SENNSVLLKTLTLHIQLDVQPVRLTEYQLYTSDAFSSRGESNSLDTQDVPAPILQNEAAL
EQLQDCIKKVKDGPPSLTTVCFYAFYNTDNLLNTAEISPNGKLLAAGFDNSSVKLWSLRS
KKLKTRPHTVNVSHIRLACDILEEEGEDEDQAGTEMKILRGHCGPVYSTRFLSNSSGLLS
CSEDSSIRFWDLKTYTNTVLYEGHAYPVWDLDVSACSLFFASGSHDRTARLWSFDRTFPL
RIYAGHLADVDCIKFHPNSNYLATGSTDKTVRLWSSQQGNSVRLFTGHRGPVLALAFSPN
GRYLASAGEDQRLKLWDLASGTLYKELRGHTDNINSLAFSPDSSLIASTSMDNSVRVWDI
RNTYCNAPSDGSSSELVGVYTGQTNNVLSVQFMACNLLMVTGTAQEQQEH
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcgcagagcagattcagttggcagtaacttgttatctcaaacgccgt
cactacatagatatagaaggatccttaaaacaagggctacgactttgtcagaccgcagag
gagatggcagctaatctaactgtacaagcagaatcaagctgtgccaatgcagtgtcttca
gcaccctgccaggttgacccacaacaatatgaattgcagtttgcacgacttcgaaatttc
atttcagaagaaaattgtccttatagtcaaaatgtgacatctctactatatcctctcttt
gtctacctccacctggacatggttcaaaatagccttaaaagcatggtggatagcttctac
agtcgcttccatggcatgttccttcatcatccagcacagaaagatataattgaacaactt
cagaccaccatgaccatgcaggacattcactcaaacatcaaactgagagcatttctagat
aacaagtatgtggttcgtctgcaagaagacagctacaactaccttctgcgctaccttcaa
agtgagaacaatagtgtccttctcaagaccctcactctgcacatccaactcgatgttcaa
cctgtcagactcacagagtaccagttatatacaagtgatgcattttcttcaagaggagag
agcaacagtcttgacacacaggatgttccagctcctattttgcagaatgaagcggctctt
gaacagctgcaagactgcataaagaaagtcaaggatgggccaccttcattgacgactgtg
tgtttttatgcattctacaacactgacaacttgctgaatacagctgagatctcgcctaat
ggcaaactcctggctgctggatttgacaactcttctgtgaaactctggagtctgaggtca
aaaaagctgaaaacgcgaccacacaccgtgaatgtttctcacatacgactagcttgtgat
atcttagaagaggagggtgaagatgaagatcaggctggtactgaaatgaagatacttaga
ggacactgtgggccagtttacagtacccgtttcctttccaatagctctggccttttatca
tgctctgaagattcatccattcgcttttgggaccttaaaacctacacaaacactgtcctg
tatgaaggccatgcatatccagtctgggatttagatgttagtgcctgtagcctctttttt
gcaagtggttctcatgatcgcacagccaggttgtggtcatttgataggacatttcctctc
cgaatatatgcaggccatttagctgatgttgactgcattaaattccatcccaactcgaat
tatcttgccacaggatctactgataagacagttcgattatggagcagtcagcaaggaaac
tctgtaagactcttcaccggacacagagggcctgtgcttgcccttgctttttccccaaat
ggaaggtacttggcctcggctggggaggatcaacgtcttaaactatgggatttggcatcg
gggactctctataaagagctgagagggcacactgacaatatcaacagccttgcattcagt
ccagacagcagcctaattgcctctacatctatggataactctgtccgtgtatgggatatt
cgaaatacttattgcaatgccccttctgatggttcgtctagtgaacttgttggtgtatac
acagggcagactaataatgtgttgagtgttcaatttatggcatgcaatctacttatggtt
actggaacagcacaagaacagcaggaacattga

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