Rana temporaria (common frog): 120937611
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Entry
120937611 CDS
T07929
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120937611 (SCAF8)
03041 Spliceosome [BR:
rtem03041
]
120937611 (SCAF8)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120937611 (SCAF8)
Spliceosome [BR:
rtem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120937611 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120937611
NCBI-ProteinID:
XP_040206914
LinkDB
All DBs
Position
4:complement(374372675..374484709)
Genome browser
AA seq
1344 aa
AA seq
DB search
MEAVKTFNSELYSLNDYKPPISKAKMTQITKSAIKALKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGHDKDVFAPRFSNNIINTFQNLYRCPVDEKSKIVRVLNLWQKN
SVFKSEIIQPLLDMAAGIAPPVVTPVFPSTAGAFGNTPGTPATPVTPANASQSTPDPWLA
QITSTDTLAAVAQILQSPQGQQLQHLVQSLHVQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATATNPLEHSVSLSKKLMDRFDFGEDAVQNEETKKEASSMSQESVNNSLFHQIAEHL
QHQQNLEQFRQQFLEQQQQQQQQQQHTPKVLQVAVQETQEMMSESENSATPSQDDSQQAF
LEKELPHHNSQNIQQEDMDIDEIQDVTEEMFEKEEKKIVKDEKPRTRSKSRSRSPRKRRS
RSRSGSRKRKHRKRSRSKSRERKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCS
TTLWVGQVDKKATQQDLTNVFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGS
CKIGSKIIKIAWALNKGVKTEYKQFWDAELGVTYISWEKVKLDDLEDFSEGGMIDQETVN
NDWANQRNAEPTVTKEPVSAPPPTTTVQSPVIPKPTIITTQTEAYTQPVAMLQIPVTPTV
PAMPAMPAVPAVPAVPAVSLVPPAFPVSMTVPPPGYTNLPPPPFMRASFNPSQPPPGFIP
PPVPPPAIPPPAISSAIPTALVPRLPISADPMKDVSYSSLMLPVGAVATTSASTTSVFNL
PSSTHIDQESKRQPSIENFTERSALNASQNTMVSSAGILTVQPQPPVTAPIPHLSMPGRI
AGMPFLDIRQGLLPQPATARFALLTPAMPPLPPSRSMLPPAFMDPTMHSLPFPPGDIFSR
PSIPSRLNSDNTPTQEESVPLPSSNIQQEGDQDYRFPPLENVGPPPGGEHNKESIQAVAA
PENKSVLTAEEIDINMRHTVDNHELQDMAVVDPSEGQEKLPECGAGYLSVEGSHETDNKA
DAQSLDILRASDHLSYESKLRNIPDSHDSEMKPPLEGRPPFGSPPIDLLPPFGRHPLDMR
EMFSRPPPDGRDHFGRVIPEDHLGRLHMDSKDHYGQPILEGRNHFGRLPMDGREHFGRPP
PDVRDHFGRVPLDGGRREQIMFHPDKPWGHRGDFDERQHLPFPGFGGPKGFEDERHRHGN
YRHEPENAMGWNRGFEPEVNRDFDDRRRPWERNRDRDDRDFAFRREINGNRFGRERPSSN
WMPPNSQVFEYFSEANATNQKEDNMPQVNGDMPETGSQQQTAKNANDPELCKQESSVKVN
EEKDAKDAEVESQLLVESTETEGT
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaaacctttaacagcgagttgtactcgctcaatgattacaagcctccc
atctccaaggctaaaatgacacagatcaccaagtctgcaattaaagccttaaagttttac
aagcatgttgttcaaagtgttgagaagtttgtacaaaagtgtaaaccagaatacaaagtt
cctggactgtatgttattgactccattgttcgacaatctaggcatcagtttggtcacgat
aaggatgtttttgcaccaaggttcagcaataacataatcaacacttttcagaacttatat
cgatgtcctgtggatgaaaagagcaagattgttagagtactgaatctgtggcagaaaaac
agtgttttcaagagtgaaattatccagcctcttcttgacatggctgctggtattgcccca
cctgttgtcacacctgtctttcctagtactgctggagcttttggcaatacacccggcacg
ccagctactccagttactcccgcaaatgcttctcaaagcacgcccgacccatggcttgct
cagataaccagtacagacaccctagccgcagtggctcaaatactacaaagccctcagggg
caacagcttcagcacttggttcagtctttgcatgtacagcaacaaaagcctcagccatca
cttctccaagcactagatgcaggacttgtggttcagttgcaagcacttactgctcaactt
acagctgcagctaccgcaacaaaccctttggagcacagtgtatcactgagtaagaaacta
atggataggtttgattttggggaagacgcggtccagaatgaagagacaaaaaaggaggca
tcatcaatgtctcaggagtctgtgaataactctcttttccatcaaattgcggaacatttg
cagcatcagcaaaatcttgaacaattccgccagcaatttttggagcagcaacaacaacaa
caacaacaacaacaacatactccaaaggttctccaggtagctgttcaggaaacccaggaa
atgatgtctgaatcggaaaactctgctacaccatcccaggatgacagccagcaagcattt
ttagagaaagagctgcctcatcataattcacaaaatatacagcaagaggatatggatatt
gatgaaatacaagatgtaactgaggagatgtttgaaaaggaagaaaagaagattgtaaaa
gatgaaaagccaaggacacgttccaaatcacgatcaagatcacctaggaaaagacgttca
agatctcgatctggatcaaggaagcgcaagcacagaaaacgttctcgatcaaagtcgaga
gaaagaaaacgaaagacctcacgctcatattcaagtgagaggagggctcgagaacgtgaa
aaagagcgccagaaaaagggtttgcctcctattcggtccaaaactctaagtgtgtgcagt
actacactctgggttggacaggttgacaaaaaggcaacacaacaagatttgactaatgtg
tttgaagagtttggacagattgaatctattaatatgattccacctcgaggctgtgcctat
gtttgcatggttcacagacaagatgcattcagagctcttcagaagcttagttctggctcc
tgtaagattggatcgaaaatcatcaagatcgcttgggcattaaataagggtgtgaaaaca
gagtacaagcagttctgggatgcggaacttggagtcacatatatttcttgggaaaaagtg
aaactggatgatctagaagatttctcagaaggtggaatgattgatcaagaaactgttaac
aatgactgggcaaatcaaagaaacgcagaacctactgtcactaaggagcctgtttctgca
ccacctcccactactactgtacaaagtccagttataccaaaacccacaatcataacaacg
caaacagaggcatatactcagccagttgcaatgctccagattccagttacaccaactgtc
cctgctatgcctgctatgcctgctgttcctgctgtccctgctgttcctgctgtaagtttg
gtaccacctgcattccctgtctctatgacggtaccacctccgggctacaccaatcttcct
ccacctccatttatgcgtgcaagtttcaacccttcacagccaccaccaggttttattcca
ccgccagtaccaccacctgctatccctcctcctgcaattagctcagctattccaacagca
ctagttccacgactgcctatttctgcagatccaatgaaagatgtttcatacagcagcctg
atgttgcctgttggagcagttgcaactacatcggcatccaccacatctgtgtttaaccta
ccttcaagtacacatatagatcaggaaagcaaaagacaaccttctatagaaaattttaca
gaaagatcagctttaaatgcctctcaaaacacaatggtgagcagtgctgggatcttgaca
gttcagccacagccccctgtcacagcacctattcctcatttgagcatgccaggtagaatt
gcggggatgccctttttagatattcgccaaggattattgccccaaccagcaacagcaaga
tttgctttattaactccagcaatgccacctctaccaccatcgagaagcatgcttccacca
gctttcatggaccctactatgcattctcttccttttcctccaggagatattttttcacgt
cctagtattccaagtagacttaattctgataacactcctactcaagaagaaagtgtacct
ctgccaagcagtaatattcaacaagaaggagaccaagattaccgttttcctccgttagaa
aatgttggcccaccacctggaggtgaacacaataaagaaagcatacaagctgtagctgcc
ccagaaaataaaagtgtgctcactgcagaggaaatagatattaatatgcgacatacagta
gataatcatgagctgcaagatatggctgttgttgatccttctgagggccaggaaaaactt
cccgaatgtggtgctgggtacttatctgtggaaggttcccatgaaactgataacaaagcg
gatgcacagtctcttgatattcttagagcatctgatcacctgtcttatgaaagtaagcta
agaaatatccctgattctcatgatagtgaaatgaaaccaccattagaaggtaggccgcca
tttggaagccccccaatagatttattaccaccatttgggagacatccattagatatgcga
gaaatgtttagcaggccaccaccagatggacgtgatcattttggtagagttattccagaa
gatcaccttgggaggcttcacatggacagtaaagatcattatggacaacctatactagag
ggcagaaatcattttggaaggttaccaatggatgggagagaacattttggaagacctcct
ccggatgtaagggatcattttggaagagtacctttagatggtggtagaagggagcaaata
atgtttcacccagataaaccatggggacatagaggtgattttgatgaaagacaacacctt
ccttttcctggttttggtggcccaaagggctttgaagatgaaagacatcgccatggcaat
tacagacatgagcctgaaaatgcgatgggttggaaccgaggatttgaaccagaggttaac
agagatttcgatgaccgccgtcgcccttgggaaagaaacagggatagagatgatcgagat
tttgcttttcgaagagaaataaacggcaaccgctttggaagggagaggccgtccagcaat
tggatgcctcctaactcacaagtgtttgagtatttttcagaagccaatgctactaaccag
aaagaggataatatgcctcaggttaatggagatatgccagaaactggcagtcaacaacaa
actgctaaaaatgcaaatgatcctgaactttgtaaacaagaatcatcagtcaaagtaaac
gaagagaaggatgccaaggatgctgaagtagagagtcaactattggttgaaagcacagaa
actgagggaacataa
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