Rana temporaria (common frog): 120937986
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Entry
120937986 CDS
T07929
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120937986 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120937986 (MSH2)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120937986 (MSH2)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
120937986
NCBI-ProteinID:
XP_040207517
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Position
4:452462620..452662312
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AA seq
930 aa
AA seq
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MAVQPKEKLSMDSGAESGFLSFYFSMPEKPETTVRVFDRSDYYTVHGSDATFAAKEVFKT
NGVIKYLGSGNKKLESVVLSKMNFESVVRDLLLVRQYRVEVYKNKSSSKTSNDWHLAFKA
SPGNLTQFEEILFGNNDMSSAVGVVGVRLVSSEGQRLVGVGYVDSTLRRLGVCEFPDNDQ
FSNLEALLVQIGPKECVMPGGDSAGDMAKLRQIVQRGGILITDRKKAEFTTKDSIQDLNR
LLKAKKGEQVNSAALPEMEKQVAMSSLSAVSKYLELLSDESNFGQFVMTCFDLTQYMKLD
NAAVGALNLFPGAAEDTSGTQSLAGLLNKCKTAQGQRLISQWIKQPLMDKNRIEERLNLV
EAFVTDVELRQSLQEDLLRRFPDFNRLAKKFQRQTANLQDCYRLYQAVNQLPNVVQTLEK
YEGSHQMLLLAVFVTPLTDLSADFYKFQEMIETTMDMDQVENHEFLVKASFDPNLTELRE
KMDELEKSMQASLNSAARELGLDAGKSIKLESNAQLGHYFRVTCKEEKALRNNKKFSTID
IQKNGLRFTNSKLSSYNEEYMRHREEYEEAQNAIVKEIINISAGYVDPIQTLNDVIAQLD
AIVSFAFVSNGAPVPYVRPIILEKGQGRIVLKSARHPCIEVQDDVAFIPNDITFEKEKQM
FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEVSIVDCILARVGAGDSQLKGVS
TFMAEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYISTKIQAFCLFATH
FHELTALADQVPSVNNLHVTALTTDETLTMLYRVKKGVCDQSFGIHVAELANFPKHVIEN
AKAKALELEEFQFIGASTDSEDEPACKRRYLEKEEGEKIIQDFLAKVKALPLTEMSEQEI
KSRLNQLRADVLARNNGFVNEVICRTKAAC
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggccgtccaaccgaaggagaagctgtctatggacagcggggcggagagcggcttcctc
agcttctacttctccatgccggaaaagccggagaccaccgtgcgggtgttcgacaggagc
gactactacacggtgcacggcagcgatgccacctttgccgccaaggaggtcttcaagacc
aacggggtcatcaaatacctgggatcagggaacaagaaattggaaagtgtggtactcagt
aaaatgaactttgagtctgttgtgagagatctgcttcttgttcgtcagtatcgggtggaa
gtttacaaaaataagtcttcaagcaaaacctccaatgactggcacctggcatttaaggcc
tctccaggaaacctgactcagtttgaagagatcttgttcggcaataatgacatgtcttct
gcggttggagttgttggtgtccgtctggtcagctctgaaggtcagagattggtcggcgtg
ggttatgtggattccactctgaggcggctgggagtatgtgaattcccggataacgatcag
ttctccaatctggaagccttgctggttcagatcgggcctaaagagtgtgtgatgcctgga
ggagacagtgccggagacatggcgaaattgagacagattgtccagagaggtgggattctg
atcacagacaggaagaaggcagagttcactacgaaggacagcatccaggatcttaaccgt
ttgttgaaagccaagaaaggagaacaagtcaatagtgctgcattaccagagatggagaag
caggttgcaatgtcttctctctcagccgtttcaaagtatctagagctgttgtcggatgaa
tccaactttggccagtttgtaatgacctgctttgacctgacccagtacatgaagctggat
aacgcagcggttggtgctttgaaccttttcccgggggcggctgaagacacaagtggcaca
cagtctttagctggcctattaaacaaatgcaaaactgcccaaggccaaagattgatcagt
cagtggatcaagcagccccttatggacaagaaccgaattgaagagagactgaacttggtg
gaggcgtttgtgaccgatgtggagctcaggcagagtcttcaggaagatcttctacgtcgt
tttccagattttaaccggctggcgaagaaattccagaggcagactgcaaacctgcaagat
tgctacaggctgtaccaggcggtgaaccagctgcccaatgtggtacagaccctggagaaa
tatgaagggtctcaccagatgctcctgctggccgtgtttgttactcctctcactgatctt
tctgctgacttctacaaatttcaggaaatgattgaaaccactatggacatggatcaggta
gaaaaccatgagtttttggtaaaggcgtcctttgatccaaacttgacggaactaagagag
aagatggatgaactggagaagagcatgcaggcgtctcttaacagtgcggccagagagttg
ggcttggatgctggaaaaagtattaaactagagtccaatgctcaacttggtcactatttc
cgtgtgacctgcaaggaagaaaaggctctgaggaacaataagaagttctccaccattgac
atccaaaaaaatggactgagattcaccaacagcaagctgagctcctataatgaagaatac
atgaggcacagagaggagtatgaagaggctcagaacgccattgtgaaagaaatcatcaac
atctctgctggttatgtggatccaattcagacactgaacgatgtaatagctcagctagat
gccattgtcagctttgcttttgtttctaatggagcgccagtaccatatgttcgtcctatc
atcctggagaagggacagggacgtatagtgctgaaatctgccagacacccgtgtattgaa
gtgcaggatgatgtggcattcattcccaatgacataacgttcgagaaggagaaacagatg
ttccatattatcactggtcctaatatgggtggaaaatccacctatattcgccagactgga
gtaatagtccttatggcccagattggctgctttgtaccgtgtgactctgcggaggtgagc
attgtggattgcattcttgctcgagtcggagctggggacagtcagctcaaaggagtgtca
accttcatggctgagatgttggagacggcttcaatcctcagatcagcaaccgagaactct
ctgatcatcattgacgagctgggcagaggcacctccacctatgacggttttggcctggcc
tgggcaatctctgagtacatctctactaaaatccaggccttttgtttgtttgccactcac
ttccatgaactaaccgctctggctgatcaggtgccaagtgtgaacaatttacatgtcaca
gcgcttacaacagatgagacgctgaccatgctctaccgagtcaagaaaggtgtctgcgat
cagagctttggaatacatgtagcggagctggctaactttccgaagcacgtaatcgaaaac
gccaaagcaaaagcattagagttggaggaattccagttcattggggcttcaacagactct
gaggatgaaccagcctgcaagaggcgctacctagaaaaagaggaaggagagaagataatt
caggattttctcgccaaagtgaaagctcttccacttactgaaatgtctgagcaggaaata
aaaagcagactgaatcagctgagggctgatgttctagccaggaataatggcttcgtcaat
gaagttatctgccgcacaaaagctgcatgctga
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