Rana temporaria (common frog): 120940053
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Entry
120940053 CDS
T07929
Name
(RefSeq) integrin beta-1-A-like
KO
K05719
integrin beta 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03271
Virion - Rotavirus
rtem04145
Phagosome
rtem04510
Focal adhesion
rtem04512
ECM-receptor interaction
rtem04514
Cell adhesion molecules
rtem04530
Tight junction
rtem04810
Regulation of actin cytoskeleton
rtem04820
Cytoskeleton in muscle cells
rtem05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
120940053
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120940053
04514 Cell adhesion molecules
120940053
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120940053
09144 Cellular community - eukaryotes
04510 Focal adhesion
120940053
04530 Tight junction
120940053
09142 Cell motility
04820 Cytoskeleton in muscle cells
120940053
04810 Regulation of actin cytoskeleton
120940053
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
120940053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtem04131
]
120940053
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtem04147
]
120940053
04515 Cell adhesion molecules [BR:
rtem04515
]
120940053
04090 CD molecules [BR:
rtem04090
]
120940053
Membrane trafficking [BR:
rtem04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
120940053
Exosome [BR:
rtem04147
]
Exosomal proteins
Proteins found in most exosomes
120940053
Cell adhesion molecules [BR:
rtem04515
]
Integrins
Integrin beta subunits
120940053
CD molecules [BR:
rtem04090
]
Proteins
120940053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
PSI_integrin
EGF_2
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
120940053
NCBI-ProteinID:
XP_040208568
LinkDB
All DBs
Position
5:60164185..60240662
Genome browser
AA seq
823 aa
AA seq
DB search
MFFLCLRGFLHGTLVSPTQAKDMTMVYKLIFMGLCLDSILYSNSQQSGTECLKANAKSCG
ECIQAGPNCGWCTKVDFLQEGEPTSARCDDLAALKRKGCSEEDIQNPRASKRTLKDNLIT
NKTKRNSMNSSEITQIRPQQLKFELRSGEPQTFNLTFRRAEDYPIDLYYLMDLSFSMKDD
LENVKNLGTALMEKMKQITSDFKIGFGSFVEKTVMPYISTTPAKLINPCTAEQQCTSPFS
YKNVLSLTSNGNLFNDLVGKQQISGNLDSPEGGFDAIMQVAVCGDHIGWRNVTRLLVFST
DAGFHFAGDGKLGGIVLPNDGKCHMQDNMYTMSHYYDYPSIAHLVRKLSENNIQTIFAVT
KDYQDIYKELAKLIPKSAVGTLSSDSNNVIQLIIDSYNSLFSELILENSKLPEGVTISYK
SFCKNGEIGTGENGRKCFNISLGDQVEFEITITAHKCPKKDQTETIKIKPLGFTEEVEIL
LKFICECDCQQFGTPDSPKCHFGNGTFECGACRCNEGRIGKECECSTHQVSSEDMDAQCR
KENSSEICSNNGDCICGQCVCNKRENPNEVYSGKYCHCDNFKCDRFNGLICGGNGVCKCR
VCECFLNFSGSACDCSEDISTCIASNGQLCNGRGTCECGRCKCADPKFHGQKCEMCQTCL
GVCAEQKECVQCRAFHKGEKQEWCDTQCAHFNLTMVDSRDKLPQPGQEDALTHCKEKDVD
DCWFYYTYSVNSSSEVYVHVVRDPDCPSGPKIVRIVAGVVAGIVLIGQALLLLWKFFIMI
HDKRECAKFEKEKMNAKWDADENPIYKSAVTTVVNPEYEGKLM
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtttttcctctgcttgcgtgggtttcttcacggtacgctggtttcccccacacaagcc
aaagacatgacgatggtgtataaactcatcttcatgggactgtgtcttgattcaatttta
tacagcaattctcagcaaagtggaacagagtgtttaaaagcgaatgccaaatcttgtgga
gaatgtatacaagctggaccaaattgtgggtggtgcacaaaagtggattttttacaagaa
ggtgagcccacatcggcacgctgtgatgatcttgctgcattgaaacgtaagggctgttca
gaggaagacattcagaatcccagagcaagcaagagaacgctaaaggacaaccttataaca
aataagaccaaaagaaattctatgaactcctctgaaattacacagatcagaccgcagcaa
ttaaaatttgaactaagatcaggagagccccagacatttaatttaacattcagaagagca
gaggattatcctattgacttgtattatcttatggacctgtcattttccatgaaagatgat
ttagagaatgtaaaaaatcttggcacagctctcatggagaaaatgaaacaaattacttca
gatttcaagataggttttgggtcttttgtagagaagacagtcatgccatatattagtact
actcctgctaaactcataaacccgtgcaccgccgaacagcaatgtaccagtccgttcagt
tacaagaatgtactcagcctcacaagtaatggaaaccttttcaatgacctagtaggcaag
cagcagatctctggtaatttggattccccagaaggtggatttgatgccatcatgcaagtc
gctgtgtgtggtgatcacattggatggaggaatgtcacacgcttgttggtgttttctacg
gatgctggcttccattttgctggtgatggcaagttaggaggaatcgttctgccaaatgat
ggaaaatgtcacatgcaagacaatatgtacacaatgagccattattatgactacccatca
atcgctcatttggtccggaagctcagtgaaaacaacatacagacaatctttgctgttact
aaggattatcaagatatttacaaggagctagcaaagctaatcccaaaatcagctgttgga
actttgtcttcagactctaataatgtaattcaactaatcattgattcctacaattcactg
ttttcagagcttattctagaaaacagcaaattaccagaaggtgtaacaatcagttataag
tcattctgtaagaatggagagattggaacaggagaaaatggaaggaaatgttttaatatc
tctctgggagatcaggttgaatttgagatcactataactgctcacaagtgccccaaaaag
gaccaaacagagaccattaaaattaaaccattgggatttactgaagaagttgagattctt
ctgaaatttatctgtgaatgtgattgtcaacagtttggaacccccgatagcccaaaatgt
cattttgggaatggtacatttgaatgtggagcctgcagatgcaatgagggtcgcattgga
aaagagtgcgaatgcagcacacatcaagttagcagtgaagacatggatgctcagtgcaga
aaagagaacagctcagagatctgcagtaacaacggagattgtatttgtggccagtgtgtg
tgtaacaagagggaaaatcctaatgaggtctactccgggaaatactgtcactgcgacaat
ttcaagtgtgaccgattcaatggattgatttgtggaggaaatggagtctgcaaatgcaga
gtttgcgagtgtttcctcaacttttctggtagtgcttgtgattgctcagaagatatctca
acatgcatagcatctaatggtcagctatgtaatggaagaggaacgtgtgaatgtggaagg
tgtaaatgtgcagatcccaaattccatgggcagaagtgtgagatgtgccagacctgtctt
ggtgtttgtgcagaacaaaaggaatgtgttcagtgcagagcatttcataaaggagagaaa
caagaatggtgtgatacccagtgtgcacatttcaaccttactatggtggacagccgtgac
aagttacctcagccaggacaggaagacgctctcacacactgcaaagagaaggatgtcgat
gattgctggttctactatacctactctgtaaattctagctctgaggtttatgtgcatgtt
gtgagagacccagattgtcccagtggccctaaaatagttcgaatcgttgctggtgtggtg
gctggaattgtacttattggacaggcattgttgcttttatggaagttttttataatgatt
catgacaaaagagagtgtgccaaatttgaaaaggagaaaatgaatgccaaatgggatgct
gatgaaaaccccatctacaagagtgcagtgacaacagtggtgaatcctgaatatgaggga
aaattaatgtga
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