KEGG   Rana temporaria (common frog): 120940116
Entry
120940116         CDS       T07929                                 
Symbol
WDR48
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
rtem  Rana temporaria (common frog)
Pathway
rtem03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    120940116 (WDR48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rtem03400]
    120940116 (WDR48)
DNA repair and recombination proteins [BR:rtem03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     120940116 (WDR48)
SSDB
Motif
Pfam: DUF3337 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 Beta-prop_DCAF12 ANAPC4_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IP5PC_F WDR54 WD_LRWD1 Beta-prop_Vps41 WD40_RFWD3 RAWUL Nucleoporin_N WD40_like Tfb2_C Beta-prop_VPS8
Other DBs
NCBI-GeneID: 120940116
NCBI-ProteinID: XP_040208701
LinkDB
Position
5:82092216..82144654
AA seq 689 aa
MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEGFTHVYSGGRDRKIYCTDLRNPDLRLLICEEKAPVLKM
ELDRSVDPPTALWVSTTKSSVNKWPLKGILNFRASGEYENDCSTPLSPICSQPDQVIKGG
ASIIQCNILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEEEIKSRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKSQSPKRILASSVNLGGLLLQA
LLEFWPKTHINPMEEEENEVNHVVNGEQENRIQKGNGYFQVPPHTPVIFGEAGGRTLFRL
LCRDSGGETESMLLNETVPQWVVDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSAS
DMLQVRKVMEHVYEKIINVDTESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQIL
DPNMDLRTVKHFIWKSGGDLTLHYRQKST
NT seq 2070 nt   +upstreamnt  +downstreamnt
atggcagctcatcacaggcagaacacggccgggcggaggaaagttcaggtttcatatgtc
attagagatgaagtggagaagtacaaccgcaacggagtgaatgctttgcagcttgatcct
gcactaaacaggctttttacagctggacgagactccatcatcagaatatggagcgtgaat
cagcacaaacaggacccctacatagcatctatggaacatcatacagactgggtgaatgac
attgtactatgctgtaatggcaaaacattaatatcagcgtcatcggataccacagttaag
gtatggaatgcacacaagggattctgcatgtcaacactgagaacacacaaggactatgtg
aaagccttagcttatgcaaaagacaaagaattggtggcatctgcaggattggacagacag
atattcctctgggatgtaaatactcttactgcactgactgcatccaacaatactgtcact
acttcctccctgagtggaaacaaagattctatatacagtctggccatgaatcagatgggc
acagtcattgtgtctggctccacggaaaaggtgctaagggtttgggaccccaggacctgt
gccaagctgatgaaactgaaaggacacacagacaatgtaaaagctttactgctaaacaga
gatgggacacagtgtctttcaggcagctcagatggcacaatccgtttgtggtctttaggc
cagcagagatgtatagccacctatcgggtgcatgacgagggtgtctgggctctccaggtc
aatgaaggcttcacccatgtttactccggagggagagatcgcaagatctactgtacagat
ttgagaaatccagatctgcggctgctcatctgtgaagaaaaggctcctgttttaaaaatg
gaacttgacagatctgttgaccctccaactgccctttgggtttcaaccaccaagtcatct
gttaataaatggcctttaaagggtattctgaacttcagagcctcaggagaatatgaaaat
gattgtagcacaccgttgagcccaatctgctcacagcctgaccaggtcattaaaggaggc
gctagcattattcagtgcaacattctcaatgacaaaaggcacatactaaccaaagataca
aataacaacgtggcctattgggatgttttgaaagcttgcaaagttgaggatttgggaaaa
gtggactttgaagaagaaattaaatccaggtttaagatggtttatgttccaaattggttc
tctgttgatctgaagacggggatgctgaccattactttagatgagagtgactgctttgca
gcctgggtatcggctaaggatgctggcttcagcagcccagatggatccgatccaaaatca
cagtctcccaaaaggattttggcttcctcagtgaaccttgggggtcttttattacaagca
ttacttgagttttggccaaaaactcacatcaaccccatggaggaagaggaaaatgaagtc
aatcacgttgtaaatggagagcaggaaaatcggatccagaaaggcaatggctattttcag
gtgccgcctcatactccagtaatctttggtgaagcaggtggacgtactctgttcaggcta
ctgtgtagagattccggcggagagactgaatccatgctactcaatgaaactgttccacaa
tgggtggtagatataactgtggataaaaacatgcccaaatttaataagattccattctac
ctccaaccccattcatcatcgggagcaaagacactgaagaaggacagactgtcagccagt
gacatgctgcaagtcagaaaggtgatggagcatgtctatgagaagattataaatgtggat
acagaatctcagacaaccagctcctcaaataatgagaagccaggagaacaagagaaagaa
gaagacattgctgtgctggctgaagagaagattgaactcctgtgtcaggaccagatttta
gatcccaatatggacctgagaactgtgaaacatttcatctggaagagtggaggtgatctg
accctccactaccgccagaaatccacgtga

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