Rana temporaria (common frog): 120940271
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Entry
120940271 CDS
T07929
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120940271 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtem03032
]
120940271 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120940271 (TOPBP1)
DNA replication proteins [BR:
rtem03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120940271 (TOPBP1)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120940271 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
120940271
NCBI-ProteinID:
XP_040208962
LinkDB
All DBs
Position
5:113888941..113950514
Genome browser
AA seq
1514 aa
AA seq
DB search
MAKGENEPFYVKFVNSPDNTKFFNEAHEEIKAFQSDEYLLIIEENEALTLKEKDKSLYVC
DPFSGAAFNHLKKLGCRIVGPQVVIFCMKHQRCVPRAEHPVFNMAMADVTISCTSLDKET
REEVHFYVQIMGGSVYRDLNVSVSHLIAGEVGSKKYLVAASLKKPILLPSWVRALWEKSQ
ERIIGYEDVDMEPYLCPVFLGCTICVTGLSSLDRKEVQRLTAIHGGQYTGQLKMNESTHL
IVQEAKGQKYECARKWNVHCVSIQWFFDSIEKRFCQDESMYKTEPVPSEKILPETSTPTG
NSNKPDNRALSDVSHISNISTSCVNESAFNSVMSTRLEPPSDTLENLDLSSVQAPEDLLD
GCRIYVCGFGGRKLDKLRKLINCGGGVRFNQLTGDVTHVIVGENDEDLKQFLNKADHRPY
VLTIKWLLDSFSKGALQPEEVYPHSSYKPAEIQDPAQQQVLVPSLRKASSTNTNVRKATN
PTRTYQADEDLLSQYAENDSTFVEPENPELTKQSNFSQMTLQDDIPSFPSQSGLGETSTI
IEGGLFSRKSFLVLGFVEEDEACVIEIIKTNAGKVLSTHKRVIADYAVVPLLGCEVEATV
GEVVTNAWLGMCIEQEILLDPQSNALFTPVTYLEGSAPLKDCVLSVSQFMGAERDSLVYL
AGLLGAKVQEFFVRKANTKKGMYASTHLVLREPEGSKYDAAKKWNLPAVTMAWLLQCART
GKKADESLFLVENASVDDKEESFVSQTYRPVVARPSLDTPDRPVSNCPEALKKSAVTPLD
MNRFQSKAFQSVLSRHSKKIQTPGGETKLPKREPSLHLDTPSKFLCRDKLFKPTFDVKDA
LAALETPGGLNQKNKTQSTPLSEMIGRNLQLALANSNRQNAAITASPQLKMVEKKTVNEE
PKILSDVVICVSKKLSKKQGELNAVAASLGAEYRWCFDESVTHFIYQGRQNDTNREFKSV
KERNGIHIVSEHWLMTCAEEQRRVAETLYPHTYNPKMSLDISAVLDIPHSSNKLSTTLKE
ENNLPDEGEQPEMAETSPNTTRNSDKAQNASSDFKGGLTQTLEMRENFQRQLQELMSATS
MVKAQGQRSALSRAGFDTSPCTPEGARTTRIGRSRILEARRNSRQTLTDLNTEPSQNEQI
IWDDPTAREERAKLASNLQWPNSPSQCTEPLLHQKGQVTDSSHFKESLTDTEIAEMEACE
LEHTSARDASKKGLDLQSPVKEDPLIPTPQAPSIAFPLANPPVAPQPKEMCEKPAVEEED
KKERRFQLSSLNPQERIDYSQLIEELGGIVIDKQCFDPSCTHIIVGQPLRNEKYLASMAA
GKWVLHRSYLEACRAAKRFIQEDDYEWGSNSILNAISSITPQQRLLAESAMRWRKKLQRI
KQEMDTVEGAFSGWKVILNVDQAKESGFKRLLQSGGAKVFVGYSSSLFKETTHLFADFGK
LKPEDARVSVAEAAAQGVNCLKPEYIADYLMKDPPPPASNYCLPDAVSYLQVAGNSRKRK
NSGDATDVKRSRLN
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaggtgaaaatgagcccttttatgtgaagtttgtaaattcgcctgacaatacg
aagttcttcaatgaagcacatgaggaaatcaaggcatttcagtcagatgaatatctactg
ataattgaagaaaatgaggccctcactttaaaagaaaaagacaaatctctttatgtatgt
gatccttttagtggtgctgcctttaaccatctaaaaaagcttggttgtagaatagttgga
ccccaggttgtaattttctgcatgaagcatcaaagatgtgttccacgagcagagcatcct
gtcttcaatatggctatggctgacgtcacaatttcatgcacaagccttgataaagaaacc
agggaagaggttcatttctatgtccagataatgggaggaagtgtctatagagatcttaat
gtttcagtcagccacctgattgctggtgaagtgggcagcaagaaataccttgtggcagcc
agtctaaagaagccgattcttctcccttcatgggtgagggccctgtgggagaagtcacag
gagaggattattggctacgaagatgtagacatggagccatatttatgtccggttttcctt
ggttgcaccatctgtgtaactggcttaagcagcctggataggaaagaagtccagaggctg
actgctatacatggaggacagtatacaggtcagctgaagatgaatgagtccacacatctt
attgtgcaagaggcaaaaggtcaaaaatatgaatgtgcaagaaaatggaatgtgcattgt
gtttctattcagtggttctttgacagcattgaaaaacgtttctgtcaggatgaaagcatg
tacaagacagaacctgtaccatcagaaaaaatattgccagagacatctactccaacagga
aatagtaacaaacctgataaccgtgcactttctgatgtcagccacatttctaatataagt
actagctgtgttaatgaatctgccttcaattctgtgatgagcaccaggctggaacctccc
agtgacactctagagaatttggatctgagttctgtacaggcccctgaagatctcctagat
ggctgcaggatatatgtgtgtggttttggaggaagaaaactggataagttgaggaaactc
attaactgtggaggtggagtgcgctttaatcaactcactggtgatgtaactcatgtaatc
gttggtgaaaatgatgaggatctaaagcaatttttgaacaaagcagaccacaggccttat
gtattaaccataaaatggctcctggacagtttttcaaagggtgccttgcagcctgaagag
gtatatccccactcttcttataagccagctgaaatccaggaccctgctcaacaacaagtt
ctcgttccatctcttcggaaggcaagcagtaccaatacaaatgttcgaaaagcaactaac
cccacacgaacttatcaagctgatgaagacttgctatcccagtatgcagaaaatgattcc
acatttgttgaaccagagaatcctgagcttaccaagcaaagcaacttctcccaaatgact
ctgcaggatgacataccctcttttcccagccaaagtggcctgggggaaacttccactatc
attgagggtggattgtttagcagaaaatccttcctggtgttgggctttgttgaagaagat
gaggcttgtgtcatagagatcattaaaacaaatgctggtaaagtgctctccacccataag
agagtcattgctgattatgccgtggtgcctttactgggctgtgaggtggaggctactgtc
ggagaagttgtcacaaatgcttggctgggaatgtgtatagaacaagaaattcttttggat
cctcagtctaatgctctcttcacgccagtgacctatctagaaggtagcgcacctctgaaa
gactgtgtcctgtctgtcagtcagtttatgggagccgaaagggattccttagtctaccta
gcaggtcttcttggagccaaagtccaagaattttttgtaagaaaggccaatacgaaaaaa
ggaatgtatgccagcactcatcttgtgcttcgagagcctgagggctccaaatatgatgca
gcaaagaagtggaatttgcctgctgtgactatggcctggctcctacagtgcgccagaact
ggcaaaaaagcagacgagagcctgtttcttgtggagaacgccagtgttgatgataaagaa
gaaagttttgtaagtcagacatataggccagtagtagcaaggccatcattggatacaccg
gaccgtcccgtctctaattgtccagaagccctgaagaaatctgcagtgaccccattggat
atgaatcgattccagagcaaggcattccagtctgtactctcaaggcacagcaaaaagatt
caaactcctggtggtgaaactaaattaccaaagagggagccatcccttcatcttgacacg
ccttcaaaatttctatgcagagataaacttttcaagccaacgtttgatgttaaggatgct
ttggcagctttggaaactccaggtggtctcaaccagaagaataaaacgcagagcacccct
ttgtcagaaatgattggcaggaacttgcagttggcactcgcaaacagtaaccgccaaaat
gcagccattacagctagtcctcagttaaaaatggttgagaaaaaaacagtaaatgaggaa
cccaaaattctcagcgatgtagttatttgtgtgagcaagaagcttagtaaaaagcaaggg
gaactgaacgcagtagctgcttctcttggagcagagtacagatggtgctttgatgaaagt
gtaacacacttcatttatcaaggaagacaaaatgacacaaatcgagaattcaagtctgtt
aaagaaagaaatggcattcacattgtatctgagcactggctcatgacttgtgcagaagaa
cagaggcgtgtcgctgagactctctatcctcacacctacaatccaaaaatgagcttggat
atcagcgctgttttagacataccacacagcagcaataaactttctacaaccttaaaagag
gagaataatctgccagacgaaggtgaacaacctgaaatggctgaaacttcccctaatacg
acacgcaactctgacaaagctcaaaatgcttcaagtgattttaaaggaggtctcacacag
acgttagagatgagggaaaatttccagcgacaactacaagagctgatgtctgcaacatct
atggtgaaagctcaagggcagagatcagcattaagtagagcagggtttgatacatccccc
tgtactccggaaggtgctcgtacaacacgtattggcaggagcagaatattggaagcgcga
agaaattctcgacagaccttaacagatttgaatacagaaccatcacaaaatgagcaaatt
atttgggatgacccaactgcaagggaagagagggccaagctggccagcaacttacagtgg
cctaacagtccctcccagtgcacagaacctttgctgcatcagaaaggtcaagttactgac
tcctctcattttaaagaatctttaacagatacagagatagccgaaatggaggcatgtgag
ctagagcatacttcagccagagatgcctcaaaaaaaggactggacctccaatctccagtt
aaggaggaccccctgatccccaccccacaggctccaagcattgcattcccacttgccaat
cctcctgtagctcctcaacccaaagaaatgtgtgagaagccagcagtggaagaagaggat
aaaaaggaaaggagattccagctttcttccctaaatcctcaggaaagaattgattactct
cagctcattgaggagctaggtggaatagtaatagataagcagtgctttgatccaagctgc
actcacatcattgttggccaacccctccgtaatgagaaatatcttgcttcaatggctgct
ggaaaatgggtgcttcatagatcttatttggaagcctgccgagctgcaaaacgcttcatt
caggaggatgattatgagtggggaagcaactcgatactgaatgctatcagtagcatcacc
ccccagcagcggttgctggcagagtcagcaatgcgatggaggaagaagctacaaaggata
aaacaagagatggacactgtggagggagcattcagtggatggaaagttatattaaatgtt
gatcaggcaaaagaatctggcttcaaacgtcttctccagtcagggggggccaaggtgttc
gttggctactcgtcatctctgttcaaagagacaacgcatctgtttgcagactttggtaaa
ctgaaacccgaagacgccagagttagtgtagcagaggctgccgcacaaggagtaaactgt
ttgaaaccagaatacattgcggattacctcatgaaggacccaccgcctcctgccagcaac
tactgccttcccgatgcagtctcctaccttcaggtggcagggaattcccgaaagaggaaa
aattctggtgatgccactgatgtaaaacggtccagactgaattaa
DBGET
integrated database retrieval system
