Rana temporaria (common frog): 120940304
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Entry
120940304 CDS
T07929
Symbol
TRIM71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120940304 (TRIM71)
04121 Ubiquitin system [BR:
rtem04121
]
120940304 (TRIM71)
Enzymes [BR:
rtem01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120940304 (TRIM71)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120940304 (TRIM71)
Ubiquitin system [BR:
rtem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120940304 (TRIM71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
SGL
zf-B_box
TEN_NHL
zf-C3HC4
ANCHR-like_BBOX
zf-RING_5
zf-C3HC4_4
zf-RING_2
Vgb_lyase
DUF1140
DUF4094
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
120940304
NCBI-ProteinID:
XP_040209008
LinkDB
All DBs
Position
5:120442023..120529968
Genome browser
AA seq
870 aa
AA seq
DB search
MASFPESDFQLCPLCKEMCVSSAPISSSSSSSSSSQTSSSSTGGSGNLGAPPRRLHVLPC
LHAFCRQCLEGHRSPGDSMQLHCPVCDHKVLMSEAGMDALPSSTFLHLSNLLDAVVGASE
EPQSNGSRGSGSGPRRQQRPRSASCSSSSLLRRAPPHQMEPRCSSCDEGNGASSHCLDCQ
ENLCDNCLRAHQRVRLTKDHFIERFTGPGSRGHGCISGTASPCNSAASSAATTSSSSSPF
QGNAFPILPMYPERLAYCQQHDEEICKSGERKTVYTLADLVRIKNWVLHFYCDSCSIPIC
RECTMGRHAGHSFVYLQDALQDSRALTIQLLADAQQGRQAIQLSLEQAQALAEQVEMKAK
VAQSEIKAGTSRHKKALEERECELLWKVEKIRQVKAKSLYHQVDKLHQALNKLDSTINAV
QQVLEEGCTMDILIARDRVLAQVQDLKNARGLLQLQEDDRIMFTPPDQALYLAIKSMGLV
SSGAFAALTKATGEGLKRALQSKVASFTVIGYDHDGEARLSGGDLITVLVMGPDGNLFAA
DVTDQMNGTYLVSYRPQLEGEHLISVMVCNQHIENSPFKVNVKSGRCYLGIGLPSLSFGG
EGDHDGKLCRPWGVCVDREGYIIVADRSNNRIQIFKPCGTFHHKFGSLGSRPGQFDRPAG
VGCDSSRRIVVADKDNHRVQIFTFEGQFLLKFGEKGTKNGQFNYPWDAAVNSEGKILVSD
TRNHRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFSQDGYLVVTDFNNHRLLIIKPDC
QSAHFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFEPNGSFLCKFGTQGSGF
GQMDRPSGIAVTPDGTIVVVDFGNNRILTF
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattcccggagtccgatttccagctgtgcccgctgtgtaaggagatgtgcgtg
tcctctgcccccatctcttcctccagctcatcctcatcttcctcccaaacctccagcagc
agcaccggagggagcgggaacctaggcgcgcccccccgaagattgcacgtattgccgtgt
cttcacgccttctgccgccagtgcttggagggccaccggagccccggcgactccatgcag
ctgcattgccccgtttgcgaccacaaggtgctcatgtcggaggcgggcatggacgccttg
ccttcctcgaccttccttcatctcagcaacctgctggacgcggtggtgggggcctcggag
gagccgcagagcaacggaagcaggggcagcggaagcggcccccggcgtcaacagcggcca
cgctcggcctcgtgttcctcatccagcctcctgcgccgagcgccaccccaccagatggaa
ccgcgctgctcctcctgcgacgaggggaacggggcgagctcacactgccttgactgccag
gagaacctgtgcgacaactgcctacgggcccaccaaagggtgcgactcaccaaggaccac
ttcatcgagcgcttcactggaccaggaagcagaggacatgggtgcatcagcggcacagcg
tccccctgcaactctgcggcgtccagcgccgccactacctcatcctcctcatcgcccttc
cagggaaatgccttccccattctgcccatgtaccccgagagattggcctactgtcagcag
cacgatgaggagatttgcaaatctggagagcgcaagacagtgtataccctggcggatctg
gtgaggattaagaattgggttctacatttctactgtgattcgtgctctatccctatatgt
cgtgagtgcactatgggacgtcatgctgggcacagttttgtctacctccaagatgctctt
caggattcaagggcacttactattcagcttctggcagatgctcaacaggggcgtcaagca
atccagctgagtcttgagcaggcccaagcactggcagagcaagttgagatgaaagccaaa
gtagcgcaatctgagatcaaagcaggcacttccaggcataagaaggcactcgaggagagg
gaatgcgagctgctatggaaggtggaaaagattcgtcaagttaaagcaaagtctctctac
catcaggttgataaacttcatcaggcgctaaacaaactagacagcacaatcaatgcagta
cagcaggttttggaagaaggctgcacaatggatatccttattgcccgcgatcgtgtattg
gctcaagtgcaagatctaaaaaatgctagaggtctgttacaacttcaagaagatgatagg
attatgttcactccacctgaccaggctttgtaccttgccatcaaatcaatgggcttagtc
agtagtggtgcttttgcagcactaacaaaagccacaggagaaggcctgaaacgagcactt
cagagcaaagttgcatccttcactgttattggctatgaccatgatggtgaagcacggtta
tcaggtggtgaccttataactgtgctggttatgggccctgatgggaatctgtttgcagct
gatgtcactgatcagatgaatggtacatatttggttagttataggccgcaacttgaagga
gaacaccttatctctgtaatggtttgcaatcagcacattgaaaacagcccgtttaaagtc
aatgtgaagtcaggtcgttgctacttggggattgggcttccctccctttcatttggggga
gagggtgatcatgatggaaagctttgccgtccctggggtgtctgtgtggatagggaaggc
tatattattgtcgctgatagaagtaacaaccgcattcaaatcttcaagccctgcggtact
tttcatcacaagtttggcagtttaggatcaagacctggtcaatttgaccggcctgctggc
gttggctgtgacagttctcgtaggattgtggtagcagataaggacaaccatcgtgttcaa
atatttacattcgagggccagttcttacttaaatttggtgaaaaagggaccaagaacggt
cagtttaattacccttgggatgctgctgtcaattcagaggggaagatccttgtctctgac
acccgaaatcaccgtgtccaattatttggtccagatgggacattcctgaacaagtatggg
tttgaaggtgctctctggaagcactttgactctccccgtggtgtggcattcagtcaggat
ggatacttggttgtcactgactttaataaccatcgtctgcttataatcaagccagactgc
cagtcagcacatttcttaggctccgagggcacaggcaatgggcagttcctgcggcctcag
ggtgttgcagtagatcaggaaggacgcatcattgtggcagattctagaaaccacagggta
caaatttttgagccaaatggaagcttcttatgcaagtttggcactcaaggaagtggcttt
ggccagatggaccgcccatctggtatagctgttacacctgatggcacaattgtcgtggtc
gactttggtaataatcggattcttaccttctaa
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